RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RAB27AP51159 221 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 HIRAP54198 1017 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 MRPS15P82914 257 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 LRRC8BQ6P9F7 803 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 RFWD3Q6PCD5 774 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 COLGALT1Q8NBJ5 622 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ILKAPQ9H0C8 392 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 EFCAB1Q9HAE3 211 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ZDHHC18Q9NUE0 388 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 C2orf71A6NGG8 1288 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 PRRG1O14668 218 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ATP6V1G1O75348 118 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 TFE3P19532 575 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 LHX1P48742 406 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 SCNN1BP51168 640 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NPNTQ6UXI9 565 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 GPR142Q7Z601 462 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 GSTCDQ8NEC7 633 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 CLPTM1LQ96KA5 538 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NDFIP2Q9NV92 336 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 HACD3Q9P035 362 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 PGK1P00558 417 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 AKR1A1P14550 325 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ADSSP30520 456 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 FOXN2P32314 431 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 BST1Q10588 318 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 KCNT2Q6UVM3 1135 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ARMCX6Q7L4S7 300 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 DDIASQ8IXT1 998 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NUP93Q8N1F7 819 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 DHX33Q9H6R0 707 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 COPS7BQ9H9Q2 264 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NUDT5Q9UKK9 219 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 WASF2Q9Y6W5 498 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ABHD2P08910 425 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NEK2P51955 445 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 TMTC4Q5T4D3 741 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 TAF2Q6P1X5 1199 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 VSTM1Q6UX27 236 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 CASP10Q92851 521 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 CADM1Q9BY67 442 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 NMUR2Q9GZQ4 415 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 KLHL25Q9H0H3 589 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 C12orf65Q9H3J6 166 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 THAP1Q9NVV9 213 aa16.7■□□□□ 0.26
CCDC88B-209ENST00000494080 ZNF280AP59817 542 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 OVOS1Q6IE37 1185 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 ZBTB49Q6ZSB9 765 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 EGFL8Q99944 293 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 SLC17A7Q9P2U7 560 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 TMEM59LQ9UK28 342 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 TMCO1Q9UM00 188 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 SLC8A2Q9UPR5 921 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 APOC4-APOC2K7ER74 178 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 APOC2P02655 101 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 GALK1P51570 392 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 JAM2P57087 298 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 USP46P62068 366 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 MMRN1Q13201 1228 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 LPCAT4Q643R3 524 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 PHF13Q86YI8 300 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 PGLYRP2Q96PD5 576 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 TBCBQ99426 244 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 SIX2Q9NPC8 291 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 AFF4Q9UHB7 1163 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 CNTNAP2Q9UHC6 1331 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 TWF1Q12792 350 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 GRIK3Q13003 919 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 PDAP1Q13442 181 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 CEP19Q96LK0 163 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 ZMYND8Q9ULU4 1186 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 AP3B1O00203 1094 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 DAB1O75553 588 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 MLH1P40692 756 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 EFEMP1Q12805 493 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 ITGA9Q13797 1035 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 WSCD1Q658N2 575 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 KYQ8NBH2 561 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 GIPC2Q8TF65 315 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 DGCR14Q96DF8 476 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 NRDE2Q9H7Z3 1164 aa16.69■□□□□ 0.26
CCDC88B-209ENST00000494080 SOWAHBA6NEL2 793 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 PTGIRP43119 386 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 CYP4X1Q8N118 509 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 RMND5BQ96G75 393 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 MTG1Q9BT17 334 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 MUC3BQ9H195 1237 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ST6GALNAC4Q9H4F1 302 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 PCDHB7Q9Y5E2 793 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 NRCAMQ92823 1304 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ANGPT2O15123 496 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 PSMD3O43242 534 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ZMPSTE24O75844 475 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 KRT75O95678 551 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ALDH1A3P47895 512 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ATN1P54259 1190 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 PTK2BQ14289 1009 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ACSBG2Q5FVE4 666 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 CES3Q6UWW8 571 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 FAM183BPQ6ZVS7 135 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms