RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 CTNNA1P35221 906 aaKnown RBP20.06■□□□□ 0.8
CCM2-216ENST00000488727 SULT1E1P49888 294 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 COG7P83436 770 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 GRM2Q14416 872 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 SLC25A52Q3SY17 297 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 CCDC14Q49A88 953 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 DCUN1D2Q6PH85 259 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 MFSD6LQ8IWD5 586 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 ZIM3Q96PE6 472 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 FAM114A2Q9NRY5 505 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 STAP1Q9ULZ2 295 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 HBS1LQ9Y450 684 aaKnown RBP20.06■□□□□ 0.8
CCM2-216ENST00000488727 SCINQ9Y6U3 715 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 FAM187AA6NFU0 413 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 TMEM191CA6NGB0 347 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 M0QYT0 321 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 IGLV3-27P01718 113 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 FCHO2Q0JRZ9 810 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 DHX34Q14147 1143 aaKnown RBP20.05■□□□□ 0.8
CCM2-216ENST00000488727 MESDQ14696 234 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 TRIP4Q15650 581 aaPredicted RBP20.05■□□□□ 0.8
CCM2-216ENST00000488727 C15orf59Q2T9L4 293 aaPredicted RBP20.05■□□□□ 0.8
CCM2-216ENST00000488727 RAB6CQ53S08 254 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 CFAP58Q5T655 872 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 SH3PXD2AQ5TCZ1 1133 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 BNIPLQ7Z465 357 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 DDX42Q86XP3 938 aaKnown RBP eCLIP20.05■□□□□ 0.8
CCM2-216ENST00000488727 SLC44A3Q8N4M1 653 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 NXPE3Q969Y0 559 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 RAB6CQ9H0N0 254 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 DDIT4Q9NX09 232 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 AMACRQ9UHK6 382 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 A0A0C4DFX4 3053 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 SYNJ2BP-COX16A0A087WUM0 186 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 KLKB1P03952 638 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 PSMC3P17980 439 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 GPD1P21695 349 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 PTPN9P43378 593 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 ATP11AP98196 1134 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 ZNF252P-AS1Q0IIN9 211 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 TRADDQ15628 312 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 GJD3Q8N144 294 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 KRT35Q92764 455 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 ASIC4Q96FT7 647 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 SLC39A13Q96H72 371 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 FCRL2Q96LA5 508 aaPredicted RBP20.05■□□□□ 0.8
CCM2-216ENST00000488727 RAB17Q9H0T7 212 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 MRPL47Q9HD33 250 aaKnown RBP20.05■□□□□ 0.8
CCM2-216ENST00000488727 PIGVQ9NUD9 493 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 RRN3Q9NYV6 651 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 COX16Q9P0S2 106 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 TLR6Q9Y2C9 796 aa20.05■□□□□ 0.8
CCM2-216ENST00000488727 GOLGA6CA6NDK9 693 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 GOLGA6DP0CG33 693 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 SDC4P31431 198 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 ATXN1P54253 815 aaKnown RBP20.04■□□□□ 0.8
CCM2-216ENST00000488727 TBX4P57082 545 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 NME3Q13232 169 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 SEL1L2Q5TEA6 688 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 RNF135Q8IUD6 432 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 FAM76AQ8TAV0 307 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 DEPDC1BQ8WUY9 529 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 PLD4Q96BZ4 506 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 LRRC45Q96CN5 670 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 PGAP3Q96FM1 320 aaPredicted RBP20.04■□□□□ 0.8
CCM2-216ENST00000488727 ZFYVE19Q96K21 471 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 GOLGA6AQ9NYA3 693 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 SH3BP1Q9Y3L3 701 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 PCDHA3Q9Y5H8 950 aa20.04■□□□□ 0.8
CCM2-216ENST00000488727 E2F8A0AVK6 867 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 TMEM110-MUSTN1A8MSY1 372 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 TTI1O43156 1089 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 KPNA1P52294 538 aaPredicted RBP20.03■□□□□ 0.8
CCM2-216ENST00000488727 ZNF143P52747 638 aaPredicted RBP20.03■□□□□ 0.8
CCM2-216ENST00000488727 RING1Q06587 406 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 ZNF211Q13398 564 aaPredicted RBP20.03■□□□□ 0.8
CCM2-216ENST00000488727 HLTFQ14527 1009 aaKnown RBP eCLIP20.03■□□□□ 0.8
CCM2-216ENST00000488727 CDO1Q16878 200 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 LRIG3Q6UXM1 1119 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 Q6ZNB5 142 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 HTR3DQ70Z44 454 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 ZBTB9Q96C00 473 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 TRMT61BQ9BVS5 477 aaKnown RBP20.03■□□□□ 0.8
CCM2-216ENST00000488727 UTP11Q9Y3A2 253 aaKnown RBP20.03■□□□□ 0.8
CCM2-216ENST00000488727 WNT6Q9Y6F9 365 aa20.03■□□□□ 0.8
CCM2-216ENST00000488727 ERICH4A6NGS2 130 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 PHF2O75151 1096 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 ENDOD1O94919 500 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 CORO1AP31146 461 aaKnown RBP20.02■□□□□ 0.8
CCM2-216ENST00000488727 CHRNA3P32297 505 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 ACTN2P35609 894 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 MARCKSL1P49006 195 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 ZC3H12AQ5D1E8 599 aaKnown RBP20.02■□□□□ 0.8
CCM2-216ENST00000488727 BBS7Q8IWZ6 715 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 CENPIQ92674 756 aaPredicted RBP20.02■□□□□ 0.8
CCM2-216ENST00000488727 LINC00597Q9H2U6 94 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 TICRRQ7Z2Z1 1910 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 COL4A2P08572 1712 aa20.02■□□□□ 0.8
CCM2-216ENST00000488727 NARSO43776 548 aaKnown RBP20.02■□□□□ 0.79
CCM2-216ENST00000488727 SPOPO43791 374 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms