RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CTSAP10619 480 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 GRK5P34947 590 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 PNLIPRP1P54315 467 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 SLC12A2P55011 1212 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 AP2B1P63010 937 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 MTA1Q13330 715 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 STIM1Q13586 685 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 TRIM14Q14142 442 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 Q4G0T1 1027 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 RAB11FIP2Q7L804 512 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 ADPRHL1Q8NDY3 354 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 DENND1AQ8TEH3 1009 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 HMGB4Q8WW32 186 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 COQ8BQ96D53 544 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 VPS16Q9H269 839 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 LIN7CQ9NUP9 197 aaKnown RBP6.72□□□□□ -1.33
USP40-213ENST00000483216 TOP2AP11388 1531 aaKnown RBP6.71□□□□□ -1.33
USP40-213ENST00000483216 CYP3A7-CYP3A51PA0A087WV96 503 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 SLC22A23A1A5C7 686 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 C2CD4BA6NLJ0 364 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 PPP6R2O75170 966 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TOP3BO95985 862 aaKnown RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 ALDOAP04075 364 aaKnown RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 RFPL3SP0C7P2 107 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 ST6GAL1P15907 406 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 CYP3A7P24462 503 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 HOXD9P28356 352 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 MMP13P45452 471 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 ZNF81P51508 661 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 SLC37A1P57057 533 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TAS2R50P59544 299 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 ID2Q02363 134 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 KLF9Q13886 244 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 TBRG1Q3YBR2 411 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TUBB8Q3ZCM7 444 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 ANXA2RQ3ZCQ2 193 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 C11orf87Q6NUJ2 197 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TMEM88Q6PEY1 159 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 ZNF474Q6S9Z5 364 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 RINLQ6ZS11 566 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 RHPN2Q8IUC4 686 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 CCDC117Q8IWD4 279 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 SCAMP5Q8TAC9 235 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 OTUD7AQ8TE49 926 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 IGFBPL1Q8WX77 278 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 LTV1Q96GA3 475 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 ZNF778Q96MU6 729 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TMEM79Q9BSE2 394 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 MAGEH1Q9H213 219 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 RAB21Q9UL25 225 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 TRPC5Q9UL62 973 aaPredicted RBP6.71□□□□□ -1.34
USP40-213ENST00000483216 DAPP1Q9UN19 280 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 SLC12A4Q9UP95 1085 aa6.71□□□□□ -1.34
USP40-213ENST00000483216 MBD3L5A6NJ08 208 aaPredicted RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 CNOT3O75175 753 aaKnown RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 CNTN5O94779 1100 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 AKR1A1P14550 325 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 TFEBP19484 476 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 FAM3BP58499 235 aaPredicted RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 ZNF91Q05481 1191 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 PDCD2Q16342 344 aaPredicted RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 FAM83BQ5T0W9 1011 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 C10orf25Q5T742 122 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 TTC22Q5TAA0 569 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 ZNF425Q6IV72 752 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 CCDC174Q6PII3 467 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 DHRS13Q6UX07 377 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 WIPF2Q8TF74 440 aaPredicted RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 KAT2BQ92831 832 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 DDX23Q9BUQ8 820 aaKnown RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 SFXN1Q9H9B4 322 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 MLXIPQ9HAP2 919 aa6.7□□□□□ -1.34
USP40-213ENST00000483216 C19orf53Q9UNZ5 99 aaPredicted RBP6.7□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3DA0A087WVF3 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3IA0A087WXS9 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3EA0A087X179 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3KA0A087X1G2 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3BA6NDS4 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3FA6NER0 549 aaPredicted RBP6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3LB9A6J9 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TLR2O60603 784 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3HP0C7X1 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 ETFDHQ16134 617 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3GQ6DHY5 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 SULT6B1Q6IMI4 303 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3CQ6IPX1 549 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 FAM57BQ71RH2 274 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 ADGRF3Q8IZF5 1079 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TBC1D3Q8IZP1 549 aaPredicted RBP6.69□□□□□ -1.34
USP40-213ENST00000483216 C16orf52Q8NHV5 167 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 ZFPM2Q8WW38 1151 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 SMG7Q92540 1137 aaKnown RBP6.69□□□□□ -1.34
USP40-213ENST00000483216 ARPC5LQ9BPX5 153 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 ABHD14AQ9BUJ0 271 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 TMEM184CQ9NVA4 438 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 GRHPRQ9UBQ7 328 aa6.69□□□□□ -1.34
USP40-213ENST00000483216 hCG_1642624A0A1W2PR95 340 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 ADAM10O14672 748 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 MOSPD3O75425 235 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 FGBP02675 491 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms