RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 GPR62Q9BZJ7 368 aa14.9□□□□□ -0.02
CHD3-211ENST00000481999 PPP1R12CQ9BZL4 782 aa14.9□□□□□ -0.02
CHD3-211ENST00000481999 TKTL2Q9H0I9 626 aa14.9□□□□□ -0.02
CHD3-211ENST00000481999 SHROOM3Q8TF72 1996 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 CA4P22748 312 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 ADRA1BP35368 520 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 PDK4Q16654 411 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 SLC45A4Q5BKX6 768 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 EFHC2Q5JST6 749 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 RFX8Q6ZV50 586 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 TMCO2Q7Z6W1 182 aaPredicted RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 C4orf33Q8N1A6 199 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 ATP11CQ8NB49 1132 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 ATAD1Q8NBU5 361 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 COLEC11Q9BWP8 271 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 C12orf65Q9H3J6 166 aaKnown RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 NMUR1Q9HB89 426 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 DMAP1Q9NPF5 467 aaPredicted RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 ARHGEF3Q9NR81 526 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 OSER1Q9NX31 292 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 A0A1W2PPM1 405 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 BCLAF3A2AJT9 711 aaKnown RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 KBTBD13C9JR72 458 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 SMAPO00193 183 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 EEF2KO00418 725 aaKnown RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 GEMIN4P57678 1058 aaKnown RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 MGAT5Q09328 741 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 SLAIN1Q8ND83 568 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 DNAI2Q9GZS0 605 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 SIK2Q9H0K1 926 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 PRDM12Q9H4Q4 367 aa14.89□□□□□ -0.03
CHD3-211ENST00000481999 SSU72Q9NP77 194 aaKnown RBP14.89□□□□□ -0.03
CHD3-211ENST00000481999 ENPP3O14638 875 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 RPLP2P05387 115 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 CCNB1P14635 433 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 SELPP16109 830 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 ERCC2P18074 760 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 USP46P62068 366 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 DNAJC3Q13217 504 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 SETDB1Q15047 1291 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 HEATR6Q6AI08 1181 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 RSPO2Q6UXX9 243 aaPredicted RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 ASRGL1Q7L266 308 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 DEFB128Q7Z7B8 93 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 PRPF39Q86UA1 669 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 CAND1Q86VP6 1230 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 SPATA2LQ8IUW3 424 aaPredicted RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 PDIK1LQ8N165 341 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 OLFM3Q96PB7 478 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 KLF6Q99612 283 aaPredicted RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 PLAC1Q9HBJ0 212 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 RABGEF1Q9UJ41 708 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 PHTF1Q9UMS5 762 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 SZT2Q5T011 3432 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 TYROBPO43914 113 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 FAM155BO75949 473 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 SRGAP2BP0DMP2 458 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 ALADP13716 330 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 RPA3P35244 121 aaPredicted RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 FAM171A1Q5VUB5 890 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 ZNF534Q76KX8 674 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 LRRC8CQ8TDW0 803 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 DQX1Q8TE96 717 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 CFAP36Q96G28 342 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 P2RY11Q96G91 374 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 CELF6Q96J87 481 aaKnown RBP14.88□□□□□ -0.03
CHD3-211ENST00000481999 CRISPLD1Q9H336 500 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 TXLNGQ9NUQ3 528 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 SLC27A5Q9Y2P5 690 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 USH1CQ9Y6N9 552 aa14.88□□□□□ -0.03
CHD3-211ENST00000481999 GOLGA8RI6L899 631 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 FBXO21O94952 628 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 UPP2O95045 317 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 TSPY1Q01534 308 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 DPYSQ14117 519 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 E2F5Q15329 346 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 KLHL38Q2WGJ6 581 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 HHATQ5VTY9 493 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 HTR3CQ8WXA8 447 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 RNF34Q969K3 372 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 RTP4Q96DX8 246 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 QKIQ96PU8 341 aaKnown RBP eCLIP14.87□□□□□ -0.034e-12■■■■■ 71
CHD3-211ENST00000481999 TSEN34Q9BSV6 310 aaKnown RBP14.87□□□□□ -0.03
CHD3-211ENST00000481999 ACSS3Q9H6R3 686 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 WDCPQ9H6R7 721 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 PAK5Q9P286 719 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 MCM8Q9UJA3 840 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 FBXW11Q9UKB1 542 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 E7ESA3 106 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 TADA2AO75478 443 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 DGKIO75912 1065 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 UNC5CO95185 931 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 ZWINTO95229 277 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 EOMESO95936 686 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 FAM163BP0C2L3 166 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 ALDH3A1P30838 453 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 GBP2P32456 591 aaPredicted RBP14.87□□□□□ -0.03
CHD3-211ENST00000481999 CDK7P50613 346 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 FAM189BP81408 668 aa14.87□□□□□ -0.03
CHD3-211ENST00000481999 VARS2Q5ST30 1063 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms