RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TMEM132DQ14C87 1099 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 SFT2D3Q587I9 215 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 DAW1Q8N136 415 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 PLEKHO2Q8TD55 490 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 DACH2Q96NX9 599 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 MTG1Q9BT17 334 aaPredicted RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 EGFL7Q9UHF1 273 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 KLHL33A6NCF5 533 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 C9JVG2 144 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 ICAM1P05362 532 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 GP5P40197 560 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 ACTR3P61158 418 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 CDCA2Q69YH5 1023 aaPredicted RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 KCTD17Q8N5Z5 321 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 C12orf50Q8NA57 414 aaPredicted RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 MKL1Q969V6 931 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 PLEKHG4BQ96PX9 1271 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 LGMNQ99538 433 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 GAKO14976 1311 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 HEATR9A2RTY3 570 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 M0QYT0 321 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 RNASEH1O60930 286 aaKnown RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 BCL10O95999 233 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 PAMP19021 973 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 MAGP20916 626 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 FBXO27Q8NI29 283 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 CELF6Q96J87 481 aaKnown RBP13.84□□□□□ -0.19
USP42-206ENST00000479544 COG4Q9H9E3 785 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 NMRAL1Q9HBL8 299 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 TSPAN16Q9UKR8 245 aa13.84□□□□□ -0.19
USP42-206ENST00000479544 FAM149AA5PLN7 773 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 KRT75O95678 551 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 AMHP03971 560 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 YBX3P16989 372 aaKnown RBP eCLIP13.83□□□□□ -0.26e-9■□□□□ 9.5
USP42-206ENST00000479544 PSMA4P25789 261 aaKnown RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 AP3M2P53677 418 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 TAF12Q16514 161 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 ASRGL1Q7L266 308 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 FAM210AQ96ND0 272 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 ACAD9Q9H845 621 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 NCF1BA6NI72 391 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 NCF1CA8MVU1 366 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 UBDO15205 165 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 DLGAP3O95886 979 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 NCF1P14598 390 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 HNRNPLP14866 589 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP42-206ENST00000479544 CDH15P55291 814 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 GPX6P59796 221 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 NADK2Q4G0N4 442 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 UNC5AQ6ZN44 842 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 MAGEE2Q8TD90 523 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 GIPC2Q8TF65 315 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 ZC3H15Q8WU90 426 aaKnown RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 BSNDQ8WZ55 320 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 PABPC5Q96DU9 382 aaKnown RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 FRMD8Q9BZ67 464 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 DMAC2Q9NW81 257 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 TJP2Q9UDY2 1190 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 RSL24D1Q9UHA3 163 aaKnown RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 TMCO1Q9UM00 188 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 ACOT9Q9Y305 439 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 TMX2Q9Y320 296 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 ROBO3Q96MS0 1386 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 MYO1GB0I1T2 1018 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 MAGEC1O60732 1142 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 OATP04181 439 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 MMP8P22894 467 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 HMOX2P30519 316 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 SERPINB1P30740 379 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 CDKN2BP42772 138 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 LAMC2Q13753 1193 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 CCDC85BQ15834 202 aaPredicted RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 PTPN20Q4JDL3 420 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 PLEKHG4Q58EX7 1191 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 OR52K1Q8NGK4 314 aa13.83□□□□□ -0.2
USP42-206ENST00000479544 NOL11Q9H8H0 719 aaKnown RBP13.83□□□□□ -0.2
USP42-206ENST00000479544 CASZ1Q86V15 1759 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 MRASO14807 208 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 FOXD2O60548 495 aaPredicted RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 LRCH4O75427 683 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 T-ENOLP0DO92 83 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 GSSP48637 474 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CLK1P49759 484 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 ARPP19P56211 112 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 UBE3AQ05086 875 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 KLF10Q13118 480 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 NANOGNBQ7Z5D8 188 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 PLD3Q8IV08 490 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 MIER2Q8N344 545 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 GLMNQ92990 594 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 KLK14Q9P0G3 267 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 A6NHS1 94 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 TTLL13PA6NNM8 815 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CXorf49A8MYA2 514 aaPredicted RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 F8W8V4 182 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 H3BSA7 217 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 RNF103O00237 685 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 BNIP3LO60238 219 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 DEAF1O75398 565 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms