RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 KLC2Q9H0B6 622 aa13.55□□□□□ -0.24
CHD3-210ENST00000479080 SIK2Q9H0K1 926 aa13.55□□□□□ -0.24
CHD3-210ENST00000479080 ARHGEF4Q9NR80 690 aa13.55□□□□□ -0.24
CHD3-210ENST00000479080 GDE1Q9NZC3 331 aa13.55□□□□□ -0.24
CHD3-210ENST00000479080 SAR1BQ9Y6B6 198 aa13.55□□□□□ -0.24
CHD3-210ENST00000479080 PRUNE2Q8WUY3 3088 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 E2F8A0AVK6 867 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 DRGXA6NNA5 263 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ZNF487B1APH4 448 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 E9PAM4 449 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 CES2O00748 559 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 DCLK1O15075 740 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 CREB3O43889 395 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 CEP104O60308 925 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ZRANB2O95218 330 aaKnown RBP eCLIP13.54□□□□□ -0.24
CHD3-210ENST00000479080 LATS1O95835 1130 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 SLC2A3P11169 496 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 TCP1P17987 556 aaKnown RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 AMPD1P23109 780 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 PDK2Q15119 407 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ARL13BQ3SXY8 428 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ALFQ53S48 1182 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ANKRD20A8PQ5CZ79 823 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 RNF43Q68DV7 783 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 NCBP2-AS2Q69YL0 99 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 NLRP14Q86W24 1093 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 CHSY1Q86X52 802 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 SLC13A5Q86YT5 568 aaPredicted RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 UNC45BQ8IWX7 931 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 TP53INP2Q8IXH6 220 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 RCOR2Q8IZ40 523 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 PLD5Q8N7P1 536 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 NETO2Q8NC67 525 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 KCTD6Q8NC69 237 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 UBE2Q2Q8WVN8 375 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 RBM41Q96IZ5 413 aaKnown RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 C1orf74Q96LT6 269 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 RNF157Q96PX1 679 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 RPP25Q9BUL9 199 aaKnown RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 HEMGNQ9BXL5 484 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 OSBPL8Q9BZF1 889 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 NDFIP2Q9NV92 336 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 OR12D3Q9UGF7 316 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 ZMYM5Q9UJ78 669 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 VANGL2Q9ULK5 521 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 TTC7AQ9ULT0 858 aaPredicted RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 R3HDM2Q9Y2K5 976 aaKnown RBP13.54□□□□□ -0.24
CHD3-210ENST00000479080 MRFAP1Q9Y605 127 aa13.54□□□□□ -0.24
CHD3-210ENST00000479080 HEPACAM2A8MVW5 462 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 EEF2KO00418 725 aaKnown RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 TSPAN3O60637 253 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 URI1O94763 535 aaPredicted RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 LAMP2P13473 410 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 PECAM1P16284 738 aaPredicted RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 SP100P23497 879 aaPredicted RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 HARS2P49590 506 aaKnown RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 KRT81Q14533 505 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 SKIV2LQ15477 1246 aaKnown RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 LEXMQ3ZCV2 418 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 SLC9A4Q6AI14 798 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 PARM1Q6UWI2 310 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 VITQ6UXI7 678 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 NPNTQ6UXI9 565 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 RFX8Q6ZV50 586 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 VSIG1Q86XK7 387 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 LGI2Q8N0V4 545 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 NPWQ8N729 165 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 LRRN4CLQ8ND94 238 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 TTC16Q8NEE8 873 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 KIF18AQ8NI77 898 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 FGF14Q92915 247 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 PBKQ96KB5 322 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 CAPZA3Q96KX2 299 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 NECTIN4Q96NY8 510 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 CALN1Q9BXU9 219 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 DCLK3Q9C098 648 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 LINC00597Q9H2U6 94 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 NOL6Q9H6R4 1146 aaKnown RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 KIF9Q9HAQ2 790 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 TMEM51Q9NW97 253 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 MPP6Q9NZW5 540 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 RCOR3Q9P2K3 495 aaPredicted RBP13.53□□□□□ -0.24
CHD3-210ENST00000479080 EPS15L1Q9UBC2 864 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.53□□□□□ -0.24
CHD3-210ENST00000479080 WNT6Q9Y6F9 365 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 UNC80Q8N2C7 3258 aa13.53□□□□□ -0.24
CHD3-210ENST00000479080 C2CD4DB7Z1M9 353 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 H3BRJ5 948 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 MFSD11O43934 449 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 FGGP02679 453 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 ERCC2P18074 760 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 GBP2P32456 591 aaPredicted RBP13.52□□□□□ -0.25
CHD3-210ENST00000479080 HCAR3P49019 387 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 COPS2P61201 443 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 RPS24P62847 133 aaKnown RBP13.52□□□□□ -0.25
CHD3-210ENST00000479080 TFF2Q03403 129 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 SLC10A2Q12908 348 aaPredicted RBP13.52□□□□□ -0.25
CHD3-210ENST00000479080 HTR4Q13639 388 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 GAB4Q2WGN9 574 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 TFDP3Q5H9I0 405 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms