RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 METTL18O95568 372 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ALDOAP04075 364 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 MYCLP12524 364 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ZFXP17010 805 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 GGT5P36269 586 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ARL1P40616 181 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 FOLR3P41439 243 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 DIO1P49895 249 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 MVDP53602 400 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ARF3P61204 181 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 GPC5P78333 572 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ARF1P84077 181 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 CDK18Q07002 472 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 EIF4A2Q14240 407 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 CCNG2Q16589 344 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 FAM69AQ5T7M9 428 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ABHD17BQ5VST6 288 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 KIAA1324Q6UXG2 1013 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 RHOUQ7L0Q8 258 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 SFTPA1Q8IWL2 248 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 LAS2Q8IYD9 372 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ADSSL1Q8N142 457 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 OR8H2Q8N162 312 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 C1orf131Q8NDD1 294 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 RFWD2Q8NHY2 731 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 IL17DQ8TAD2 202 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ELP4Q96EB1 424 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 SNX18Q96RF0 628 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 THAP7Q9BT49 309 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 ELOVL1Q9BW60 279 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 RNF26Q9BY78 433 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 USP44Q9H0E7 712 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 CCDC68Q9H2F9 335 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 SEMA4BQ9NPR2 832 aaPredicted RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 GAR1Q9NY12 217 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 MTMR4Q9NYA4 1195 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 SEMA5BQ9P283 1151 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 CNOT11Q9UKZ1 510 aaKnown RBP5.66□□□□□ -1.5
UPF3B-203ENST00000478840 FZD1Q9UP38 647 aa5.66□□□□□ -1.5
UPF3B-203ENST00000478840 PIPSLA2A3N6 862 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 UNC119BA6NIH7 251 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 AP4M1O00189 453 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 PLSCR1O15162 318 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 PRAMEF2O60811 474 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 TIPRLO75663 272 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 HSPA1AP0DMV8 641 aaKnown RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 HSPA1BP0DMV9 641 aaKnown RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ACADMP11310 421 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 UBL4AP11441 157 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 LAMP2P13473 410 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ALOX12P18054 663 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 PRKCHP24723 683 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 HOXD13P35453 343 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 RAE1P78406 368 aaKnown RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 PSG6Q00889 435 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 TXNRD1Q16881 649 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 KRTAP19-4Q3LI73 84 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF766Q5HY98 468 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 LCNL1Q6ZST4 164 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ZNF551Q7Z340 670 aaPredicted RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 GALNT5Q7Z7M9 940 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 LINC01465Q8N7H1 131 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 C12orf76Q8N812 135 aaPredicted RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ENDOVQ8N8Q3 282 aaKnown RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ASB10Q8WXI3 467 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 LENG9Q96B70 501 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 RNFT2Q96EX2 444 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 EDC3Q96F86 508 aaKnown RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 KAZALD1Q96I82 304 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 NR1H4Q96RI1 486 aaPredicted RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 CD180Q99467 661 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 SDF4Q9BRK5 362 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 HTATIP2Q9BUP3 242 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 CLPBQ9H078 707 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 DEF6Q9H4E7 631 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ZCCHC4Q9H5U6 513 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 PRKRIP1Q9H875 184 aaPredicted RBP5.65□□□□□ -1.5
UPF3B-203ENST00000478840 SERTAD4Q9NUC0 356 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 ABHD10Q9NUJ1 306 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 THAP1Q9NVV9 213 aa5.65□□□□□ -1.5
UPF3B-203ENST00000478840 CENPVL1A0A0U1RR11 272 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 NPIPB13A6NJU9 1138 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 NPIPB5A8MRT5 1133 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TEX22C9J3V5 150 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 NPIPB4C9JG80 1138 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 CES2O00748 559 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 ZNF213O14771 459 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TCERG1O14776 1098 aaKnown RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TNFSF14O43557 240 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 URI1O94763 535 aaPredicted RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 MLYCDO95822 493 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 C1RP00736 705 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 PEPDP12955 493 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 ARSAP15289 507 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 GALNSP34059 522 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 JAK3P52333 1124 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 PDE1AP54750 535 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 BLOC1S1P78537 153 aa5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TBCEQ15813 527 aaPredicted RBP5.64□□□□□ -1.51
UPF3B-203ENST00000478840 TBC1D25Q3MII6 688 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms