RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SLC47A2Q86VL8 602 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 MFN1Q8IWA4 741 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 AHI1Q8N157 1196 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 CARNMT1Q8N4J0 409 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 STK32AQ8WU08 396 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 PRCCQ92733 491 aaPredicted RBP17.3■□□□□ 0.36
USP40-212ENST00000473191 SERPINB11Q96P15 392 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 PRSS16Q9NQE7 514 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 DNAJC12Q9UKB3 198 aa17.3■□□□□ 0.36
USP40-212ENST00000473191 SYNJ2BP-COX16A0A087WUM0 186 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 FOXN3O00409 490 aaPredicted RBP17.29■□□□□ 0.36
USP40-212ENST00000473191 CAPN9O14815 690 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 TIMM44O43615 452 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 TRUB2O95900 331 aaKnown RBP17.29■□□□□ 0.36
USP40-212ENST00000473191 ERBB2P04626 1255 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 ZNF445P59923 1031 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 DCAF12L1Q5VU92 463 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 FAM183BPQ6ZVS7 135 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 ENOSF1Q7L5Y1 443 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 CIR1Q86X95 450 aaPredicted RBP17.29■□□□□ 0.36
USP40-212ENST00000473191 DEFB106AQ8N104 65 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 MINDY1Q8N5J2 469 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 C1orf131Q8NDD1 294 aaKnown RBP17.29■□□□□ 0.36
USP40-212ENST00000473191 OR2T3Q8NH03 318 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 WFIKKN2Q8TEU8 576 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 AZIN2Q96A70 460 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 MRGPRX3Q96LB0 322 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 ADAM33Q9BZ11 813 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 POPDC2Q9HBU9 364 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 SAMSN1Q9NSI8 373 aaKnown RBP17.29■□□□□ 0.36
USP40-212ENST00000473191 COX16Q9P0S2 106 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 SPEGQ15772 3267 aa17.29■□□□□ 0.36
USP40-212ENST00000473191 ASCC3Q8N3C0 2202 aaKnown RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 DLDP09622 509 aaKnown RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 ACSL1P33121 698 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 CSKP41240 450 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 IRAK1P51617 712 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 YWHAZP63104 245 aaKnown RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 FAM193AP78312 1265 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 GFPT1Q06210 699 aaPredicted RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 ZNF252P-AS1Q0IIN9 211 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 MEA1Q16626 185 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 MAN2A1Q16706 1144 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 PLEKHG6Q3KR16 790 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 MPP7Q5T2T1 576 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 APCDD1Q8J025 514 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 LGI2Q8N0V4 545 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 HJURPQ8NCD3 748 aaPredicted RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 FIBINQ8TAL6 211 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 PPP1R13BQ96KQ4 1090 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 THAP9Q9H5L6 903 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 C6orf106Q9H6K1 298 aaPredicted RBP17.28■□□□□ 0.36
USP40-212ENST00000473191 PLA2G4CQ9UP65 541 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 WASF3Q9UPY6 502 aa17.28■□□□□ 0.36
USP40-212ENST00000473191 NUMA1Q14980 2115 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 GTPBP10A4D1E9 387 aaKnown RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 ARHGAP33O14559 1287 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 IGLV3-19P01714 112 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 PRKCSHP14314 528 aaPredicted RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 POLR2EP19388 210 aaKnown RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 TFE3P19532 575 aaPredicted RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 TACR2P21452 398 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 HOXD12P35452 270 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 GGCXP38435 758 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 RPS14P62263 151 aaKnown RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 BNC1Q01954 994 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 FOXC1Q12948 553 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 SEMA3BQ13214 749 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 NNTQ13423 1086 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 TPD52L1Q16890 204 aaPredicted RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 PTPN20Q4JDL3 420 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 VWA3BQ502W6 1294 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 BEND5Q7L4P6 421 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 ZCCHC9Q8N567 271 aaKnown RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 CEP76Q8TAP6 659 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 DNASE2BQ8WZ79 361 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 CAMK1GQ96NX5 476 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 PRMT1Q99873 361 aaKnown RBP17.27■□□□□ 0.36
USP40-212ENST00000473191 TUBGCP2Q9BSJ2 902 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 MIR1-1HGQ9H1L0 117 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 NDST4Q9H3R1 872 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 LMBRD1Q9NUN5 540 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 PCDHGC3Q9UN70 934 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 FHOD1Q9Y613 1164 aa17.27■□□□□ 0.36
USP40-212ENST00000473191 SPAARA0A1B0GVQ0 90 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 METTL12A8MUP2 240 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 MEI4A8MW99 385 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 SART1O43290 800 aaKnown RBP17.26■□□□□ 0.35
USP40-212ENST00000473191 KRT37O76014 449 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 LUC7L3O95232 432 aaKnown RBP17.26■□□□□ 0.35
USP40-212ENST00000473191 ACADMP11310 421 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 CD59P13987 128 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 CSRP1P21291 193 aaKnown RBP17.26■□□□□ 0.35
USP40-212ENST00000473191 GRIK2Q13002 908 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 PITRM1Q5JRX3 1037 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 OTUD1Q5VV17 481 aaPredicted RBP17.26■□□□□ 0.35
USP40-212ENST00000473191 OLFML1Q6UWY5 402 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 PIP4P1Q86T03 277 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 CHSY1Q86X52 802 aa17.26■□□□□ 0.35
USP40-212ENST00000473191 DHX40Q8IX18 779 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms