RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NT5C3BQ969T7 300 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 SKA1Q96BD8 255 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 MOCOSQ96EN8 888 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 FCRL3Q96P31 734 aaPredicted RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 SDR42E2A6NKP2 422 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 GOLGA8TH3BQL2 631 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 EEF2KO00418 725 aaKnown RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 TPP1O14773 563 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 ITM2AO43736 263 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 HAUS5O94927 633 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 ERCC2P18074 760 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 NOS2P35228 1153 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 CDK16Q00536 496 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 MAP2K5Q13163 448 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 MORN1Q5T089 497 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 LGSNQ5TDP6 509 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 SMYD5Q6GMV2 418 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 STKLD1Q8NE28 680 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 N4BP2L2Q92802 583 aaPredicted RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 PPP1R10Q96QC0 940 aaKnown RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 RAB3IPQ96QF0 476 aaPredicted RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 ACSS2Q9NR19 701 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 C17orf102A2RUQ5 167 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 HAS3O00219 553 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PTPN4P29074 926 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PNPLA4P41247 253 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 CRYBB1P53674 252 aaPredicted RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 AQP5P55064 265 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 TREML1Q86YW5 311 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 LRRC39Q96DD0 335 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PTCD3Q96EY7 689 aaKnown RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 GORASP1Q9BQQ3 440 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 FRMD8Q9BZ67 464 aaPredicted RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 XAB2Q9HCS7 855 aaKnown RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 FCHO1O14526 889 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PEX11AO75192 247 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 AP1G2O75843 785 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 C6orf222P0C671 652 aaPredicted RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 RPL10AP62906 217 aaKnown RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 CDC42EP1Q00587 391 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PDE1CQ14123 709 aaPredicted RBP19.63■□□□□ 0.73
VIM-203ENST00000469543 CRYMQ14894 314 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 PARP6Q2NL67 630 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 CXCL17Q6UXB2 119 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 ARCQ7LC44 396 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 CMC1Q7Z7K0 106 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 INPP5DQ92835 1189 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 AGAP2Q99490 1192 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 ST3GAL5Q9UNP4 418 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 C15orf41Q9Y2V0 281 aa19.63■□□□□ 0.73
VIM-203ENST00000469543 ATP5HO75947 161 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 TPH1P17752 444 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 WARSP23381 471 aaKnown RBP19.62■□□□□ 0.73
VIM-203ENST00000469543 ADRA1BP35368 520 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 SLC8A3P57103 927 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 GPR162Q16538 588 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 KHDC1Q4VXA5 237 aaKnown RBP19.62■□□□□ 0.73
VIM-203ENST00000469543 WDR6Q9NNW5 1121 aaKnown RBP19.62■□□□□ 0.73
VIM-203ENST00000469543 TAS2R1Q9NYW7 299 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 EMCNQ9ULC0 261 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 RPS6KL1Q9Y6S9 549 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 IQCA1LA6NCM1 817 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 F8W810 466 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 GABRDO14764 452 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 SPNS2Q8IVW8 549 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 CELF6Q96J87 481 aaKnown RBP19.62■□□□□ 0.73
VIM-203ENST00000469543 ZNF570Q96NI8 536 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 NUDCD1Q96RS6 583 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 DDIT4Q9NX09 232 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 SIRPGQ9P1W8 387 aa19.62■□□□□ 0.73
VIM-203ENST00000469543 ZNF487B1APH4 448 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 PGK1P00558 417 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 AXLP30530 894 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 SCNN1GP51170 649 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 OCRLQ01968 901 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 IFRD2Q12894 506 aaPredicted RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 DPYSQ14117 519 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 FSCN1Q16658 493 aaKnown RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 TEX44Q53QW1 395 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 TLDC1Q6P9B6 456 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 PACS1Q6VY07 963 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 FBXO41Q8TF61 875 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 XPNPEP3Q9NQH7 507 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 ZBTB24O43167 697 aaPredicted RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 DAB1O75553 588 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 FAM200BP0CF97 657 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 CRHR1P34998 444 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 PURAQ00577 322 aaKnown RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 N4BP2L1Q5TBK1 243 aaPredicted RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 CST9Q5W186 159 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 LRRC8BQ6P9F7 803 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 TNS4Q8IZW8 715 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 TOP6BLQ8N6T0 577 aa19.61■□□□□ 0.73
VIM-203ENST00000469543 NOP53Q9NZM5 478 aaKnown RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 KLHL8Q9P2G9 620 aaPredicted RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 MTO1Q9Y2Z2 717 aaKnown RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.61■□□□□ 0.73
VIM-203ENST00000469543 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.6■□□□□ 0.73
VIM-203ENST00000469543 DCLK1O15075 740 aa19.6■□□□□ 0.73
VIM-203ENST00000469543 XPOTO43592 962 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms