RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CEP350Q5VT06 3117 aa7.85□□□□□ -1.15
COL6A3-208ENST00000468792 NLRC5Q86WI3 1866 aa7.85□□□□□ -1.15
COL6A3-208ENST00000468792 MAGEB16A2A368 324 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SDR42E2A6NKP2 422 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 FAM159BA6NKW6 160 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 WASH4PA8MWX3 477 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 GOLGA8MH3BSY2 632 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 I6L893 689 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 HAX1O00165 279 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 IRAK2O43187 625 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PSMD3O43242 534 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 MFSD11O43934 449 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TBC1D4O60343 1298 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 DDHD2O94830 711 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 METTL18O95568 372 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 APOEP02649 317 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CXCL10P02778 98 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 APRTP07741 180 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SLC2A3P11169 496 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 VAV1P15498 845 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 KRT15P19012 456 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 FGFR3P22607 806 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CCR1P32246 355 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SERPINB9P50453 376 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TPI1P60174 286 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 YWHAGP61981 247 aaKnown RBP eCLIP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PITX1P78337 314 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 GAD2Q05329 585 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 WASHC5Q12768 1159 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 NME3Q13232 169 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SPARCL1Q14515 664 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TMED2Q15363 201 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 LACTB2Q53H82 288 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 MANEALQ5VSG8 457 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TIFABQ6ZNK6 161 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SH2D5Q6ZV89 423 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 ZNF534Q76KX8 674 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TAC4Q86UU9 113 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 LRRC6Q86X45 466 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 ZNF280BQ86YH2 543 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 ANKMY2Q8IV38 441 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 IGDCC3Q8IVU1 814 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SRRM1Q8IYB3 904 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 NUP93Q8N1F7 819 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PYROXD2Q8N2H3 581 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 COLGALT1Q8NBJ5 622 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CCDC197Q8NCU1 140 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 GSDMBQ8TAX9 411 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 DQX1Q8TE96 717 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 NDRG1Q92597 394 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SEPT8Q92599 483 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 SPATA17Q96L03 361 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 FAM193BQ96PV7 902 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PRMT1Q99873 361 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 MRPL9Q9BYD2 267 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 TKTL2Q9H0I9 626 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 VPS11Q9H270 941 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 KDM4CQ9H3R0 1056 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PRDM12Q9H4Q4 367 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 PAK6Q9NQU5 681 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CLIC5Q9NZA1 410 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CACNG4Q9UBN1 327 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 CTNNAL1Q9UBT7 734 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 OR12D3Q9UGF7 316 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 ZC3H7BQ9UGR2 993 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 INPP5FQ9Y2H2 1132 aa7.84□□□□□ -1.15
COL6A3-208ENST00000468792 RRP15Q9Y3B9 282 aaKnown RBP7.84□□□□□ -1.15
COL6A3-208ENST00000468792 GOLGA6L7A0A1B0GV03 622 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 CARNS1A5YM72 827 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 KCNU1A8MYU2 1149 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 POC1B-GALNT4F8VUJ3 575 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 FAM72CH0Y354 149 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 RNF103O00237 685 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 CREB3O43889 395 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 SNX3O60493 162 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 NBNO60934 754 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 KRT37O76014 449 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 KIAA0754O94854 1291 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 LRIG2O94898 1065 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 RTN3O95197 1032 aaPredicted RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 AP2A1O95782 977 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 EFEMP2O95967 443 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 OAS1P00973 400 aaKnown RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 IL1BP01584 269 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 ALDH2P05091 517 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 ITGB1P05556 798 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 INHBAP08476 426 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 CREB1P16220 341 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 CCNCP24863 283 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 GBP2P32456 591 aaPredicted RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 GARSP41250 739 aaKnown RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 IFNAR2P48551 515 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 SLC5A3P53794 718 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 WDR4P57081 412 aaKnown RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 GPR17Q13304 367 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 GPNMBQ14956 572 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 PKN2Q16513 984 aaKnown RBP7.83□□□□□ -1.16
COL6A3-208ENST00000468792 DBN1Q16643 649 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 PDK4Q16654 411 aa7.83□□□□□ -1.16
COL6A3-208ENST00000468792 SKIDA1Q1XH10 827 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms