RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SRGAP2O75044 1071 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 ASGR2P07307 311 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 ARSAP15289 507 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 HTR7P34969 479 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 GGCXP38435 758 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 CDH6P55285 790 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 TDGQ13569 410 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 KRT81Q14533 505 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 DHCR24Q15392 516 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 DPYSL2Q16555 572 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 PPP6R3Q5H9R7 873 aaPredicted RBP16.3■□□□□ 0.2
USP40-206ENST00000443711 LY6G5CQ5SRR4 150 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 MEI1Q5TIA1 1274 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 TRIM68Q6AZZ1 485 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 FBXL22Q6P050 247 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 RHBDF2Q6PJF5 856 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 C14orf80Q86SX3 495 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 KATNAL2Q8IYT4 538 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 CPA6Q8N4T0 437 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 HJURPQ8NCD3 748 aaPredicted RBP16.3■□□□□ 0.2
USP40-206ENST00000443711 ASIC4Q96FT7 647 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 HES6Q96HZ4 224 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 RPRD1AQ96P16 312 aaPredicted RBP16.3■□□□□ 0.2
USP40-206ENST00000443711 KCTD15Q96SI1 283 aaPredicted RBP16.3■□□□□ 0.2
USP40-206ENST00000443711 EBF3Q9H4W6 596 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 VANGL2Q9ULK5 521 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 C5orf42Q9H799 3197 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 PRUNE2Q8WUY3 3088 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 TYW5A2RUC4 315 aaKnown RBP16.29■□□□□ 0.2
USP40-206ENST00000443711 DRGXA6NNA5 263 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 FAM72CH0Y354 149 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 H3BRJ5 948 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 CREB3O43889 395 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 LRIG2O94898 1065 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 ADH1CP00326 375 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 KRT1P04264 644 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 KDELR1P24390 212 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 ARL4AP40617 200 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 HCAR3P49019 387 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 PEX5P50542 639 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 ARSEP51690 589 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 VCPP55072 806 aaKnown RBP16.29■□□□□ 0.2
USP40-206ENST00000443711 RWDD2BP57060 319 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 GNG11P61952 73 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 SEMA3BQ13214 749 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 RUNX3Q13761 415 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 RPS6KA1Q15418 735 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 C5orf22Q49AR2 442 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 MPP7Q5T2T1 576 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 FAM72AQ5TYM5 149 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 TTC39BQ5VTQ0 682 aaPredicted RBP16.29■□□□□ 0.2
USP40-206ENST00000443711 FAM72DQ6L9T8 149 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 TPGS1Q6ZTW0 290 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 FAM72BQ86X60 149 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 TMEM25Q86YD3 366 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 ZNF683Q8IZ20 524 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 RCOR2Q8IZ40 523 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 SLC35F6Q8N357 371 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 FAM71BQ8TC56 605 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 CSGALNACT1Q8TDX6 532 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 DDI1Q8WTU0 396 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 KRT35Q92764 455 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 TBC1D31Q96DN5 1066 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 ECT2Q9H8V3 914 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 PCDH18Q9HCL0 1135 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 HPS4Q9NQG7 708 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 MARK1Q9P0L2 795 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 STIM2Q9P246 746 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 RCOR3Q9P2K3 495 aaPredicted RBP16.29■□□□□ 0.2
USP40-206ENST00000443711 PPARGC1AQ9UBK2 798 aaKnown RBP16.29■□□□□ 0.2
USP40-206ENST00000443711 JRKLQ9Y4A0 524 aa16.29■□□□□ 0.2
USP40-206ENST00000443711 IGLV3-10A0A075B6K4 115 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 LRRD1A4D1F6 860 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 EEF2KO00418 725 aaKnown RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 DDX3YO15523 660 aaKnown RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 TBL1XO60907 577 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 ZRANB2O95218 330 aaKnown RBP eCLIP16.28■□□□□ 0.2
USP40-206ENST00000443711 CYP17A1P05093 508 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 MARCKSL1P49006 195 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 TPI1P60174 286 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 GAD2Q05329 585 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 TNK2Q07912 1038 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 ANO4Q32M45 955 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 ITPRIPL2Q3MIP1 535 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 MANEALQ5VSG8 457 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 RWDD4Q6NW29 188 aaKnown RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 ZSCAN30Q86W11 494 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 EXD1Q8NHP7 514 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 RAPGEF5Q92565 580 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 IGSF8Q969P0 613 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 RBM41Q96IZ5 413 aaKnown RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 PRICKLE1Q96MT3 831 aaPredicted RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 BBS2Q9BXC9 721 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 CALN1Q9BXU9 219 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 RETREG1Q9H6L5 497 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 TRPV5Q9NQA5 729 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 KLHL11Q9NVR0 708 aa16.28■□□□□ 0.2
USP40-206ENST00000443711 CWC15Q9P013 229 aaKnown RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 PACSIN2Q9UNF0 486 aaPredicted RBP16.28■□□□□ 0.2
USP40-206ENST00000443711 EYSQ5T1H1 3165 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms