RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CFAP97Q9P2B7 532 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 SCINQ9Y6U3 715 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 TMEM131Q92545 1883 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 CKAP5Q14008 2032 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MACROD2A1Z1Q3 448 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 USP27XA6NNY8 438 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 ATMINO43313 823 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 KAT7O95251 611 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 KLF8O95600 359 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 ABL1P00519 1130 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MBL2P11226 248 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 CSRP1P21291 193 aaKnown RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MMP8P22894 467 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 EIF2DP41214 584 aaKnown RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 PTGER3P43115 390 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 GPD2P43304 727 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 ACADSBP45954 432 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 PLA2G4AP47712 749 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 RGS7P49802 495 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 NAP1L1P55209 391 aaKnown RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 KDSRQ06136 332 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 FOXC1Q12948 553 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 IFI16Q16666 785 aaKnown RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MAP7D1Q3KQU3 841 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 PKDCCQ504Y2 493 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 DAB2IPQ5VWQ8 1189 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 DNAJC24Q6P3W2 148 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 UNQ6494/PRO21346Q6UXR6 183 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 DNAAF5Q86Y56 855 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 RHOT2Q8IXI1 618 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 TMEFF1Q8IYR6 380 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MCOLN2Q8IZK6 566 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 PIGKQ92643 395 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 WBP2Q969T9 261 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 VCPIP1Q96JH7 1222 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 ALS2CR12Q96Q35 445 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 DUSP16Q9BY84 665 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 THAP2Q9H0W7 228 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 EHD2Q9NZN4 543 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 MYO1AQ9UBC5 1043 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 CNOT8Q9UFF9 292 aaKnown RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 EVLQ9UI08 416 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-208ENST00000437607 HCN2Q9UL51 889 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 GUCA1BQ9UMX6 200 aa12.66□□□□□ -0.38
PTPRF-208ENST00000437607 A0A0A6YYK5 440 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-208ENST00000437607 BTNL10A8MVZ5 291 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 SLC9A3R1O14745 358 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-208ENST00000437607 TNFRSF10BO14763 440 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 PJA2O43164 708 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 COCHO43405 550 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 KIF5CO60282 957 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 APODP05090 189 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ADH5P11766 374 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 CEACAM1P13688 526 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 MAP3K7CLP57077 242 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 IFRD2Q12894 506 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-208ENST00000437607 LY6G5CQ5SRR4 150 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ZNF662Q6ZS27 426 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 CLEC20AQ6ZU45 233 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 PAQR9Q6ZVX9 377 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ARMCX6Q7L4S7 300 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ETFBKMTQ8IXQ9 262 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 SIX6OS1Q8N1H7 587 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 STK32AQ8WU08 396 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 HSFY1Q96LI6 401 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 SLITRK1Q96PX8 696 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 CPXM1Q96SM3 734 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 KCNK16Q96T55 309 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 LACRTQ9GZZ8 138 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 LRRC4Q9HBW1 653 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 PNPLA8Q9NP80 782 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 CYLDQ9NQC7 956 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ARHGEF4Q9NR80 690 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 CTTNBP2NLQ9P2B4 639 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 WDR35Q9P2L0 1181 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 TRIM10Q9UDY6 481 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ZMIZ1Q9ULJ6 1067 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 TFR2Q9UP52 801 aa12.65□□□□□ -0.38
PTPRF-208ENST00000437607 ATXN2Q99700 1313 aaKnown RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ADAMTS20P59510 1910 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 A0A0U1RQJ8 604 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 E2F8A0AVK6 867 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 RCCD1A6NED2 376 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 E5RJQ4 531 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ALDH1A2O94788 518 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ERBB2P04626 1255 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 RRM1P23921 792 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 YWHAQP27348 245 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 GRIA2P42262 883 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ARHGAP25P42331 645 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 TNFRSF4P43489 277 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 NOP2P46087 812 aaKnown RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 GSCP56915 257 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 ADIGQ0VDE8 80 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 UAP1L1Q3KQV9 507 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 HSF5Q4G112 596 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 TRIM61Q5EBN2 209 aa12.64□□□□□ -0.39
PTPRF-208ENST00000437607 PEAR1Q5VY43 1037 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-208ENST00000437607 LPCAT2Q7L5N7 544 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms