RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RGSL1A5PLK6 1076 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 H0YCG3 227 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ACOT8O14734 319 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 XPO1O14980 1071 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 WDR46O15213 610 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 DGAT1O75907 488 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ALDH1A2O94788 518 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 PKNOX1P55347 436 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 TUBA4AP68366 448 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 GHRHRQ02643 423 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 RELAQ04206 551 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 SPIDRQ14159 915 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 INSCQ1MX18 579 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 PDCD4Q53EL6 469 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 FAM160B2Q86V87 743 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 TTLL6Q8N841 843 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 RNF157Q96PX1 679 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 FERMT1Q9BQL6 677 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 NUF2Q9BZD4 464 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 XPNPEP3Q9NQH7 507 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 BCLAF3A2AJT9 711 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 METTL18O95568 372 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 PIGRP01833 764 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ERBB2P04626 1255 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ALDH2P05091 517 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ICAM1P05362 532 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 COL6A2P12110 1019 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ZFXP17010 805 aaPredicted RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 GRIA1P42261 906 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 YWHAEP62258 255 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 CTBSQ01459 385 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 TGFBIQ15582 683 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 NRF1Q16656 503 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 PPP6R3Q5H9R7 873 aaPredicted RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 STEAP4Q687X5 459 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 PGAM4Q8N0Y7 254 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ACO2Q99798 780 aaKnown RBP10.98□□□□□ -0.65
USP54-204ENST00000422491 NIF3L1Q9GZT8 377 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 LHX5Q9H2C1 402 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 TCF7L2Q9NQB0 619 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 GABBR1Q9UBS5 961 aa10.98□□□□□ -0.65
USP54-204ENST00000422491 ARHGEF37A1IGU5 675 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 LDHAP00338 332 aaKnown RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 EIF2AK2P19525 551 aaKnown RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 ME2P23368 584 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 TCF7P36402 384 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 CCR3P51677 355 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RAB15P59190 212 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 MYL6P60660 151 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 SEZ6Q53EL9 994 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RAB6CQ53S08 254 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PPM1JQ5JR12 505 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 NAPRTQ6XQN6 538 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ILDR2Q71H61 639 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PQLC3Q8N755 202 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RNF148Q8N7C7 305 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RP9Q8TA86 221 aaKnown RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 SYTL5Q8TDW5 730 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 USP13Q92995 863 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 EME1Q96AY2 570 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 MSTO1Q9BUK6 570 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 SLC4A5Q9BY07 1137 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RAB6CQ9H0N0 254 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PDZD7Q9H5P4 517 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 EBF1Q9UH73 591 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 MYRFQ9Y2G1 1151 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PCDHA10Q9Y5I2 948 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 KLRG2A4D1S0 409 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 TRIM43BA6NCK2 446 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 BMP10O95393 424 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 OATP04181 439 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 TFPTP0C1Z6 253 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 NELFEP18615 380 aaKnown RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 TPSB2P20231 275 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 IL4RP24394 825 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 GMPRP36959 345 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 CD151P48509 253 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ATXN3P54252 364 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 DPYSQ14117 519 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 IKBKEQ14164 716 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PGM5Q15124 567 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 TPSAB1Q15661 275 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 SH3PXD2AQ5TCZ1 1133 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ITPRIPL1Q6GPH6 555 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 SLFN12LQ6IEE8 588 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 GPR180Q86V85 440 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RDM1Q8NG50 284 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 DQX1Q8TE96 717 aaKnown RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 LRRN4Q8WUT4 740 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 KCNN1Q92952 543 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ISOC1Q96CN7 298 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 RCN3Q96D15 328 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 COX4I2Q96KJ9 171 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 OSBPL11Q9BXB4 747 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ZNF341Q9BYN7 854 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 CAAP1Q9H8G2 361 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 COQ10BQ9H8M1 238 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PRDM16Q9HAZ2 1276 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 VPS45Q9NRW7 570 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 PNPLA3Q9NST1 481 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms