RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SH2D3CQ8N5H7 860 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 HES6Q96HZ4 224 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 TBL1YQ9BQ87 522 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 PDGFDQ9GZP0 370 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 NPHS2Q9NP85 383 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 DMAC2Q9NW81 257 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 STX18Q9P2W9 335 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 VTI1BQ9UEU0 232 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 DMGDHQ9UI17 866 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ZMYM5Q9UJ78 669 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ADAM28Q9UKQ2 775 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 EVPLLA8MZ36 301 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 USP17L7P0C7H9 530 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 GYS2P54840 703 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 TGM3Q08188 693 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 PTP4A2Q12974 167 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 GRM3Q14832 879 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 INTS6LQ5JSJ4 861 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 CES5AQ6NT32 575 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 OR5B17Q8NGF7 314 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 LNX1Q8TBB1 728 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 RBPJLQ9UBG7 517 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 STARD13Q9Y3M8 1113 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 RNF103-CHMP3A0A140T963 221 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 TISP43B9A030 160 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 RIPK2O43353 540 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 LCA5LO95447 670 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 C4BPAP04003 597 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 AMPD1P23109 780 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 TKTP29401 623 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 PSMD5Q16401 504 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 HS6ST3Q8IZP7 471 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 GLIS3Q8NEA6 775 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ARMC2Q8NEN0 867 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SKA1Q96BD8 255 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 PURBQ96QR8 312 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SLC7A5P2Q9GIP4 190 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 IARS2Q9NSE4 1012 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SMIM28A0A1B0GU29 152 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 CCT8L1PA6NM43 557 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SRRM3A6NNA2 597 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 C5orf58C9J3I9 102 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 FSCN2O14926 492 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 ZW10O43264 779 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 BCL2L1Q07817 233 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 DPYSL3Q14195 570 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 LYPLAL1Q5VWZ2 237 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 PKN3Q6P5Z2 889 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 FAM183BPQ6ZVS7 135 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 FAM35AQ86V20 835 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 ZSWIM2Q8NEG5 633 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 OR2W6PQ8NHA6 318 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 THOC1Q96FV9 657 aaKnown RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 NSL1Q96IY1 281 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 TTPALQ9BTX7 342 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 NFKBIZQ9BYH8 718 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SPG21Q9NZD8 308 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 ARHGAP26Q9UNA1 814 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 A0A1W2PQ67 120 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MYO1CO00159 1063 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 THRAP10827 490 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 PTPN3P26045 913 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SCNN1BP51168 640 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MED21Q13503 144 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 ARMC12Q5T9G4 340 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 FAXCQ5TGI0 409 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 RRM2BQ7LG56 351 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MYLPFQ96A32 169 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 ZNF333Q96JL9 665 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 FZD8Q9H461 694 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 TAS2R13Q9NYV9 303 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SOX13Q9UN79 622 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 CILPO75339 1184 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MMP8P22894 467 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MAD2L1Q13257 205 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 PPIGQ13427 754 aaKnown RBP eCLIP12.25□□□□□ -0.452e-7■■□□□ 12.2
PTPRF-205ENST00000414879 TMC3Q7Z5M5 1100 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SH3GL1Q99961 368 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 HIPK3Q9H422 1215 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 PDZD7Q9H5P4 517 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 COL20A1Q9P218 1284 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MORF4L1Q9UBU8 362 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 M0R2N6 131 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 KPNA5O15131 536 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 TSPAN1O60635 241 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 VPS4BO75351 444 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 TNFSF9P41273 254 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 NPY5RQ15761 445 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 SLC25A52Q3SY17 297 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 PCID2Q5JVF3 399 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 KYAT3Q6YP21 454 aaKnown RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MREGQ8N565 214 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 MAGEB10Q96LZ2 347 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-205ENST00000414879 GPAMQ9HCL2 828 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 COQ4Q9Y3A0 265 aa12.25□□□□□ -0.45
PTPRF-205ENST00000414879 CPA3P15088 417 aa12.24□□□□□ -0.45
PTPRF-205ENST00000414879 RFC1P35251 1148 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-205ENST00000414879 GRK3P35626 688 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms