RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ATF7IP2Q5U623 682 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ARHGAP17Q68EM7 881 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SCARA3Q6AZY7 606 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 C16orf89Q6UX73 402 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC26A9Q7LBE3 791 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 STRADAQ7RTN6 431 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 CTAGE3PQ8IX95 158 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 PQLC1Q8N2U9 271 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 C1orf127Q8N9H9 656 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF280CQ8ND82 737 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SEPT1Q8WYJ6 367 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 HSPH1Q92598 858 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 EZH1Q92800 747 aaPredicted RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 KHSRPQ92945 711 aaKnown RBP eCLIP5.9□□□□□ -1.475e-7■■■■□ 19.6
CCDC88A-203ENST00000412148 PBXIP1Q96AQ6 731 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SPATA13Q96N96 652 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 NDNQ99608 321 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 EPAS1Q99814 870 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 EBF4Q9BQW3 602 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 MECRQ9BV79 373 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 MRPL40Q9NQ50 206 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 HOMER2Q9NSB8 354 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 PRMT7Q9NVM4 692 aaPredicted RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 MTMR10Q9NXD2 777 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 HOXC10Q9NYD6 342 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 IGSF9Q9P2J2 1179 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ADAMTS6Q9UKP5 1117 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ANKRD6Q9Y2G4 727 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 DNAJC16Q9Y2G8 782 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 GOLGA8QA0A0J9YX86 632 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RBM47A0AV96 593 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 GOLGA8OA6NCC3 632 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 C2orf71A6NGG8 1288 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 GOLGA8NF8WBI6 632 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 AP3B1O00203 1094 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TMCC1O94876 653 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 APRTP07741 180 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 HSPA1AP0DMV8 641 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 HSPA1BP0DMV9 641 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 THRAP10827 490 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CYP2C9P11712 490 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PDGFRAP16234 1089 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 UBA1P22314 1058 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 GP5P40197 560 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ALDH18A1P54886 795 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 AIF1P55008 147 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CSE1LP55060 971 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 POLE2P56282 527 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RAB15P59190 212 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 KDSRQ06136 332 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 MMRN1Q13201 1228 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PDAP1Q13442 181 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 KRT81Q14533 505 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PDK3Q15120 406 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RASIP1Q5U651 963 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PDPK2PQ6A1A2 396 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 NPNTQ6UXI9 565 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 LBX2Q6XYB7 198 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 DNAJC14Q6Y2X3 702 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM183BPQ6ZVS7 135 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 UNC93AQ86WB7 457 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 LRRC43Q8N309 656 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 EMC1Q8N766 993 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ICA1LQ8NDH6 482 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 GSTCDQ8NEC7 633 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RP9Q8TA86 221 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 GDPD5Q8WTR4 605 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 DEPDC1BQ8WUY9 529 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC35F5Q8WV83 523 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SREK1Q8WXA9 508 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ARNTL2Q8WYA1 636 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RILPQ96NA2 401 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SNRNP25Q9BV90 132 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC2A11Q9BYW1 496 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CDH19Q9H159 772 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RPF1Q9H9Y2 349 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ALG13Q9NP73 1137 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 MYOZ2Q9NPC6 264 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 THEGQ9P2T0 379 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 HESX1Q9UBX0 185 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TJP2Q9UDY2 1190 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 VTI1BQ9UEU0 232 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 DMTF1Q9Y222 760 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 M0QYV0 167 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CYB561D2O14569 222 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CREB3O43889 395 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 AVILO75366 819 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 AP1G2O75843 785 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TNFAIP8O95379 198 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 METTL18O95568 372 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ASLP04424 464 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ITGA2BP08514 1039 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 UBTFL6P0CB48 400 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CCDC166P0CW27 439 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 HARSP12081 509 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 COL6A2P12110 1019 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 COX4I1P13073 169 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CD19P15391 556 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 VAV1P15498 845 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms