RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 SDHAF4Q5VUM1 108 aa21.31■■□□□ 1
USP39-203ENST00000409470 ZNF567Q8N184 647 aa21.31■■□□□ 1
USP39-203ENST00000409470 NPWQ8N729 165 aa21.31■■□□□ 1
USP39-203ENST00000409470 CKAP2Q8WWK9 683 aa21.31■■□□□ 1
USP39-203ENST00000409470 FUBP3Q96I24 572 aaKnown RBP eCLIP21.31■■□□□ 1
USP39-203ENST00000409470 CASD1Q96PB1 797 aa21.31■■□□□ 1
USP39-203ENST00000409470 PGLYRP2Q96PD5 576 aa21.31■■□□□ 1
USP39-203ENST00000409470 PAIP2Q9BPZ3 127 aaKnown RBP21.31■■□□□ 1
USP39-203ENST00000409470 PCDHB5Q9Y5E4 795 aa21.31■■□□□ 1
USP39-203ENST00000409470 TCP11X1B4DZS4 312 aa21.3■■□□□ 1
USP39-203ENST00000409470 KCNK1O00180 336 aa21.3■■□□□ 1
USP39-203ENST00000409470 PQBP1O60828 265 aaKnown RBP21.3■■□□□ 1
USP39-203ENST00000409470 ALDH2P05091 517 aa21.3■■□□□ 1
USP39-203ENST00000409470 MX2P20592 715 aa21.3■■□□□ 1
USP39-203ENST00000409470 GRIA1P42261 906 aa21.3■■□□□ 1
USP39-203ENST00000409470 HTRA3P83110 453 aa21.3■■□□□ 1
USP39-203ENST00000409470 DDR2Q16832 855 aa21.3■■□□□ 1
USP39-203ENST00000409470 PARP6Q2NL67 630 aa21.3■■□□□ 1
USP39-203ENST00000409470 PID1Q7Z2X4 250 aa21.3■■□□□ 1
USP39-203ENST00000409470 SCD5Q86SK9 330 aa21.3■■□□□ 1
USP39-203ENST00000409470 PDCD7Q8N8D1 485 aaKnown RBP21.3■■□□□ 1
USP39-203ENST00000409470 SIK2Q9H0K1 926 aa21.3■■□□□ 1
USP39-203ENST00000409470 OSBPL2Q9H1P3 480 aa21.3■■□□□ 1
USP39-203ENST00000409470 KLHL8Q9P2G9 620 aaPredicted RBP21.3■■□□□ 1
USP39-203ENST00000409470 SFMBT1Q9UHJ3 866 aa21.3■■□□□ 1
USP39-203ENST00000409470 TTLL3Q9Y4R7 772 aa21.3■■□□□ 1
USP39-203ENST00000409470 A0A1W2PQH9 124 aa21.29■■□□□ 1
USP39-203ENST00000409470 ANKRD65E5RJM6 399 aa21.29■■□□□ 1
USP39-203ENST00000409470 PITPNM1O00562 1244 aa21.29■■□□□ 1
USP39-203ENST00000409470 TRIM66O15016 1216 aa21.29■■□□□ 1
USP39-203ENST00000409470 KIAA0754O94854 1291 aa21.29■■□□□ 1
USP39-203ENST00000409470 SRGAP2BP0DMP2 458 aa21.29■■□□□ 1
USP39-203ENST00000409470 KRT4P19013 534 aa21.29■■□□□ 1
USP39-203ENST00000409470 PSMB4P28070 264 aa21.29■■□□□ 1
USP39-203ENST00000409470 CYP2C18P33260 490 aa21.29■■□□□ 1
USP39-203ENST00000409470 PGFP49763 221 aa21.29■■□□□ 1
USP39-203ENST00000409470 BRMS1LQ5PSV4 323 aa21.29■■□□□ 1
USP39-203ENST00000409470 RWDD4Q6NW29 188 aaKnown RBP21.29■■□□□ 1
USP39-203ENST00000409470 CTAGE3PQ8IX95 158 aa21.29■■□□□ 1
USP39-203ENST00000409470 NUP93Q8N1F7 819 aa21.29■■□□□ 1
USP39-203ENST00000409470 STKLD1Q8NE28 680 aa21.29■■□□□ 1
USP39-203ENST00000409470 CABS1Q96KC9 395 aa21.29■■□□□ 1
USP39-203ENST00000409470 SIGLEC10Q96LC7 697 aa21.29■■□□□ 1
USP39-203ENST00000409470 DEFB118Q96PH6 123 aa21.29■■□□□ 1
USP39-203ENST00000409470 EBNA1BP2Q99848 306 aaKnown RBP21.29■■□□□ 1
USP39-203ENST00000409470 SMOC2Q9H3U7 446 aa21.29■■□□□ 1
USP39-203ENST00000409470 ARHGEF38Q9NXL2 777 aa21.29■■□□□ 1
USP39-203ENST00000409470 GGA2Q9UJY4 613 aa21.29■■□□□ 1
USP39-203ENST00000409470 COL4A4P53420 1690 aaPredicted RBP21.29■■□□□ 1
USP39-203ENST00000409470 IQANK1A0A1B0GTG1 560 aa21.29■■□□□ 1
USP39-203ENST00000409470 GSTA2P09210 222 aa21.29■■□□□ 1
USP39-203ENST00000409470 CA4P22748 312 aa21.29■■□□□ 1
USP39-203ENST00000409470 CCR1P32246 355 aa21.29■■□□□ 1
USP39-203ENST00000409470 GPR15P49685 360 aa21.29■■□□□ 1
USP39-203ENST00000409470 IL9RQ01113 521 aa21.29■■□□□ 1
USP39-203ENST00000409470 ZNF280DQ6N043 979 aa21.29■■□□□ 1
USP39-203ENST00000409470 PRPF39Q86UA1 669 aaKnown RBP21.29■■□□□ 1
USP39-203ENST00000409470 MPP5Q8N3R9 675 aa21.29■■□□□ 1
USP39-203ENST00000409470 SLC44A1Q8WWI5 657 aa21.29■■□□□ 1
USP39-203ENST00000409470 CASP10Q92851 521 aa21.29■■□□□ 1
USP39-203ENST00000409470 APBB2Q92870 758 aa21.29■■□□□ 1
USP39-203ENST00000409470 B3GALT6Q96L58 329 aa21.29■■□□□ 1
USP39-203ENST00000409470 C8orf48Q96LL4 319 aa21.29■■□□□ 1
USP39-203ENST00000409470 BRD8Q9H0E9 1235 aa21.29■■□□□ 1
USP39-203ENST00000409470 NMUR1Q9HB89 426 aa21.29■■□□□ 1
USP39-203ENST00000409470 EIF2B3Q9NR50 452 aaKnown RBP21.29■■□□□ 1
USP39-203ENST00000409470 SAMD15Q9P1V8 674 aa21.29■■□□□ 1
USP39-203ENST00000409470 NUDT5Q9UKK9 219 aa21.29■■□□□ 1
USP39-203ENST00000409470 MYO18AQ92614 2054 aaKnown RBP21.28■■□□□ 1
USP39-203ENST00000409470 TRDMT1O14717 391 aaKnown RBP21.28■■□□□ 1
USP39-203ENST00000409470 MSI1O43347 362 aaKnown RBP21.28■■□□□ 1
USP39-203ENST00000409470 ARPP19P56211 112 aa21.28■■□□□ 1
USP39-203ENST00000409470 PPIDQ08752 370 aaKnown RBP21.28■■□□□ 1
USP39-203ENST00000409470 IFT88Q13099 833 aa21.28■■□□□ 1
USP39-203ENST00000409470 EIF4EBP2Q13542 120 aaPredicted RBP21.28■■□□□ 1
USP39-203ENST00000409470 UNC5AQ6ZN44 842 aa21.28■■□□□ 1
USP39-203ENST00000409470 PPM1NQ8N819 430 aa21.28■■□□□ 1
USP39-203ENST00000409470 GPR62Q9BZJ7 368 aa21.28■■□□□ 1
USP39-203ENST00000409470 APOEP02649 317 aa21.28■■□□□ 1
USP39-203ENST00000409470 MLNP12872 115 aa21.28■■□□□ 1
USP39-203ENST00000409470 PTPN3P26045 913 aa21.28■■□□□ 1
USP39-203ENST00000409470 RPA3P35244 121 aaPredicted RBP21.28■■□□□ 1
USP39-203ENST00000409470 SLC18A1P54219 525 aa21.28■■□□□ 1
USP39-203ENST00000409470 DEPDC1BQ8WUY9 529 aa21.28■■□□□ 1
USP39-203ENST00000409470 HDAC11Q96DB2 347 aa21.28■■□□□ 1
USP39-203ENST00000409470 MAGEB18Q96M61 343 aa21.28■■□□□ 1
USP39-203ENST00000409470 TGS1Q96RS0 853 aaKnown RBP21.28■■□□□ 1
USP39-203ENST00000409470 HAPLN3Q96S86 360 aa21.28■■□□□ 1
USP39-203ENST00000409470 FBXO44Q9H4M3 255 aa21.28■■□□□ 1
USP39-203ENST00000409470 SAGE1Q9NXZ1 904 aa21.28■■□□□ 1
USP39-203ENST00000409470 IGSF9Q9P2J2 1179 aa21.28■■□□□ 1
USP39-203ENST00000409470 SCML2Q9UQR0 700 aa21.28■■□□□ 1
USP39-203ENST00000409470 OR6C75A6NL08 312 aa21.27■■□□□ 1
USP39-203ENST00000409470 HOXA2O43364 376 aa21.27■■□□□ 1
USP39-203ENST00000409470 MT-ND3P03897 115 aa21.27■■□□□ 1
USP39-203ENST00000409470 GARSP41250 739 aaKnown RBP21.27■■□□□ 1
USP39-203ENST00000409470 SLC11A1P49279 550 aa21.27■■□□□ 1
USP39-203ENST00000409470 WDR4P57081 412 aaKnown RBP21.27■■□□□ 1
USP39-203ENST00000409470 GALNT2Q10471 571 aa21.27■■□□□ 1
USP39-203ENST00000409470 NUGGCQ68CJ6 796 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms