RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RRN3Q9NYV6 651 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 GRHL1Q9NZI5 618 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 CALCOCO1Q9P1Z2 691 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 STAP1Q9ULZ2 295 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 TCRBV7S2A1N4TA0A589 114 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 M0QYT0 321 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 TRUB2O95900 331 aaKnown RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 KRT14P02533 472 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 IVLP07476 585 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 MBL2P11226 248 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 LAMP2P13473 410 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 TFE3P19532 575 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 GBP2P32456 591 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 SLC7A9P82251 487 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 ATP11AP98196 1134 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 PUS10Q3MIT2 529 aaKnown RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 FAM78AQ5JUQ0 283 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 CEP85LQ5SZL2 805 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 AGBL2Q5U5Z8 902 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 ZDHHC24Q6UX98 284 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 KDM7AQ6ZMT4 941 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 OTOP3Q7RTS5 596 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 ARID3BQ8IVW6 561 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 ZSCAN18Q8TBC5 510 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 RBM41Q96IZ5 413 aaKnown RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 TRIM31Q9BZY9 425 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 SMG9Q9H0W8 520 aaKnown RBP13.9□□□□□ -0.19
LIMS1-204ENST00000409441 SMOC2Q9H3U7 446 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 GKN1Q9NS71 199 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 SNX24Q9Y343 169 aa13.9□□□□□ -0.19
LIMS1-204ENST00000409441 C2orf16Q68DN1 1984 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SLC12A8A0AV02 714 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 MYZAPP0CAP1 466 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 PSMA2P25787 234 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 WEE1P30291 646 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 PTPN9P43378 593 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 RPL21P46778 160 aaKnown RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SULT1E1P49888 294 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 NME3Q13232 169 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SMAD2Q15796 467 aaKnown RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 C15orf59Q2T9L4 293 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SH3PXD2AQ5TCZ1 1133 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 TAC4Q86UU9 113 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 NIPA2Q8N8Q9 360 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 FNIP1Q8TF40 1166 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 TBCBQ99426 244 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 CNPY3Q9BT09 278 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 KLF16Q9BXK1 252 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 ADAM33Q9BZ11 813 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 TDP1Q9NUW8 608 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SMPD4Q9NXE4 827 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 CWC15Q9P013 229 aaKnown RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 WHRNQ9P202 907 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 CPQQ9Y646 472 aa13.89□□□□□ -0.19
LIMS1-204ENST00000409441 ZFP37Q9Y6Q3 630 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-204ENST00000409441 SYNJ2BP-COX16A0A087WUM0 186 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 DPYSL4O14531 572 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 MSI1O43347 362 aaKnown RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ENDOD1O94919 500 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 F9P00740 461 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 IGLV3-25P01717 112 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 NUDT17P0C025 328 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 SP100P23497 879 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 KPNA1P52294 538 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 TAS2R40P59535 323 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 COPS2P61201 443 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 COG7P83436 770 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ZXDBP98169 803 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ZNF844Q08AG5 666 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 KLF1Q13351 362 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 PTK6Q13882 451 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 PIGHQ14442 188 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 SLMAPQ14BN4 828 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ZSCAN26Q16670 478 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 CDO1Q16878 200 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 CROCCP2Q86T23 111 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 RCOR2Q8IZ40 523 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ARFGAP2Q8N6H7 521 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 CENPIQ92674 756 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 SMARCD2Q92925 531 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 USP13Q92995 863 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ART4Q93070 314 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ASB16Q96NS5 453 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 SERPINB11Q96P15 392 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 PHF7Q9BWX1 381 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-204ENST00000409441 CAPS2Q9BXY5 557 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 DCLK3Q9C098 648 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 DDIT4Q9NX09 232 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 COX16Q9P0S2 106 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 ARHGAP26Q9UNA1 814 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 FAM50BQ9Y247 325 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 CCL26Q9Y258 94 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 USTQ9Y2C2 406 aa13.88□□□□□ -0.19
LIMS1-204ENST00000409441 GAS8O95995 478 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 HMBSP08397 361 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PTPN7P35236 360 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PMS2P54278 862 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PLTPP55058 493 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 TBX4P57082 545 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 CAV1Q03135 178 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms