RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 COX7A2P14406 83 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PPM1AP35813 382 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SERPINB5P36952 375 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MAGEA9P43362 315 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SNRPD1P62314 119 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 OTUD4Q01804 1114 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 KLC1Q07866 573 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 CRY1Q16526 586 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ATP13A4Q4VNC1 1196 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SCARA3Q6AZY7 606 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 RAET1GQ6H3X3 334 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SLC13A5Q86YT5 568 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 SLC22A9Q8IVM8 553 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SIRT2Q8IXJ6 389 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PIK3R5Q8WYR1 880 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 GAD1Q99259 594 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PRKD2Q9BZL6 878 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PDGFDQ9GZP0 370 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 CLEC4MQ9H2X3 399 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 FANCEQ9HB96 536 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ITGA11Q9UKX5 1188 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SLC27A6Q9Y2P4 619 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SH3GLB1Q9Y371 365 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 RP1L1Q8IWN7 2480 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 SLCO1B7G3V0H7 640 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MAGEA10P43363 369 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 PIK3CGP48736 1102 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ADIGQ0VDE8 80 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 HSPA14Q0VDF9 509 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 CDH17Q12864 832 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ACVR2BQ13705 512 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 TFDP3Q5H9I0 405 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 RPTNQ6XPR3 784 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 DNAJC14Q6Y2X3 702 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 MILR1Q7Z6M3 343 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PARP9Q8IXQ6 854 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 REPS2Q8NFH8 660 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 IPCEF1Q8WWN9 437 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 UBE2E3Q969T4 207 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PHF21BQ96EK2 531 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ZNHIT2Q9UHR6 403 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ENOPH1Q9UHY7 261 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 UMODL1Q5DID0 1318 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 GTPBP1O00178 669 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 PSTPIP1O43586 416 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 AVILO75366 819 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 DNTTP04053 509 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 CSF1RP07333 972 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 LYNP07948 512 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ANXA5P08758 320 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ARP10275 920 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ATP6V1B1P15313 513 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 KELP23276 732 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 COILP38432 576 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 RAP1GAPP47736 663 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FXR2P51116 673 aaKnown RBP eCLIP7.34□□□□□ -1.234e-9■■■□□ 18.8
UPF2-203ENST00000397053 PURAQ00577 322 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 CREMQ03060 361 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 SRSF11Q05519 484 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 MTF1Q14872 753 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ESRP1Q6NXG1 681 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 TRPM8Q7Z2W7 1104 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 RBM23Q86U06 439 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 COL23A1Q86Y22 540 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 WDR49Q8IV35 697 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 HDHD2Q9H0R4 259 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 VANGL2Q9ULK5 521 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 GSAPA4D1B5 854 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 WWP2O00308 870 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 SCAMP3O14828 347 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 RBMXL2O75526 392 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 ATG7O95352 703 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 CYP1A1P04798 512 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 MYL12AP19105 171 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 AXLP30530 894 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 MDH1P40925 334 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 HNF4AP41235 474 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 BEX3Q00994 111 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 LY6KQ17RY6 165 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 HECTD3Q5T447 861 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 IQSEC1Q6DN90 963 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 NEK5Q6P3R8 708 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FAM126BQ8IXS8 530 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ZNF671Q8TAW3 534 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ASZ1Q8WWH4 475 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ANKS1AQ92625 1134 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 KCNB2Q92953 911 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 GLMNQ92990 594 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 NSL1Q96IY1 281 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 SH3GL3Q99963 347 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FAIM2Q9BWQ8 316 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 PIF1Q9H611 641 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TLE6Q9H808 572 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 PTPRHQ9HD43 1115 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 VPS45Q9NRW7 570 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FOXN3O00409 490 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 IGF2BP3O00425 579 aaKnown RBP eCLIP7.34□□□□□ -1.23
UPF2-203ENST00000397053 ZNF185O15231 689 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 NTSR2O95665 410 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 MGAT5Q09328 741 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms