RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 NLRP5P59047 1200 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 RACK1P63244 317 aaKnown RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 CDK17Q00537 523 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 CPEB4Q17RY0 729 aaKnown RBP eCLIP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 SEL1L3Q68CR1 1132 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ISM2Q6H9L7 571 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 RGS7BPQ6MZT1 257 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 LAYNQ6UX15 382 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF367Q7RTV3 350 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 TFAP2DQ7Z6R9 452 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 GPSM1Q86YR5 675 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 DHX37Q8IY37 1157 aaKnown RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 FSTL5Q8N475 847 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 TMEM87AQ8NBN3 555 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MBD3L2Q8NHZ7 208 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 GPRASP2Q96D09 838 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF845Q96IR2 970 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 BTBD1Q9H0C5 482 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 NTN4Q9HB63 628 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 OXSMQ9NWU1 459 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 LOXL2Q9Y4K0 774 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 POLQO75417 2590 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 HYDINQ4G0P3 5121 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 PCNX3Q9H6A9 2034 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 HERC1Q15751 4861 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 DPPA5A6NC42 116 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 LILRA5A6NI73 299 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 MS4A18H0YCH9 400 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 BLOC1S5-TXNDC5H3BN57 136 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 GLRX3O76003 335 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 TPOP07202 933 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 PROS1P07225 676 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ATP6V1B1P15313 513 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 TYK2P29597 1187 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 CIITAP33076 1130 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 NUDT6P53370 316 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 CCT2P78371 535 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 TAGLNQ01995 201 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SYT16Q17RD7 645 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 LY6KQ17RY6 165 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 C2orf83Q53S99 150 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZSCAN25Q6NSZ9 544 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 Q6ZSV7 163 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 PASD1Q8IV76 773 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 UEVLDQ8IX04 471 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 DDIASQ8IXT1 998 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 DSELQ8IZU8 1212 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 TRIM58Q8NG06 486 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 GRHL3Q8TE85 626 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 OSCP1Q8WVF1 389 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNRF4Q8WWF5 429 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 RSPRY1Q96DX4 576 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 MFSD3Q96ES6 412 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SENP5Q96HI0 755 aaPredicted RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SCLYQ96I15 445 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 PKP2Q99959 881 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 PIGQQ9BRB3 760 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 PTDSS2Q9BVG9 487 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SLC25A18Q9H1K4 315 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SAMD15Q9P1V8 674 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 MGAT4CQ9UBM8 478 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 HDAC6Q9UBN7 1215 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 IKZF3Q9UKT9 509 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 SRRM2Q9UQ35 2752 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 MOB4Q9Y3A3 225 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF711Q9Y462 761 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF175Q9Y473 711 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 KIF25-AS1Q9Y6Z4 181 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 DSPP15924 2871 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 FAT3Q8TDW7 4589 aa-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 FLNAP21333 2647 aaKnown RBP-0.34□□□□□ -2.46
RNU6-540P-201ENST00000384622 ASTN2O75129 1339 aaPredicted RBP-0.35□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF785A8K8V0 405 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 HNRNPCL2B2RXH8 293 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 CHEK2O96017 543 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 CD99P14209 185 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 ITIH1P19827 911 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 KLK2P20151 261 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 SLC5A2P31639 672 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 HUNKP57058 714 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 PSMC1P62191 440 aaKnown RBP-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZC3H12BQ5HYM0 836 aaKnown RBP-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 EFHC1Q5JVL4 640 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 SLC35E4Q6ICL7 350 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 Q6ZS52 159 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 SKAP1Q86WV1 359 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 IZUMO1Q8IYV9 350 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 Q8N377 158 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 EFHBQ8N7U6 833 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 C12orf76Q8N812 135 aaPredicted RBP-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 GSTCDQ8NEC7 633 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 DDX55Q8NHQ9 600 aaKnown RBP eCLIP-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 KAT2BQ92831 832 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 SIK2Q9H0K1 926 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 GREM2Q9H772 168 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 CYTL1Q9NRR1 136 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 BARHL2Q9NY43 387 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 B4GALT6Q9UBX8 382 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 LAMP3Q9UQV4 416 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 FASNP49327 2511 aaKnown RBP-0.35□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms