RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 DYRK4Q9NR20 520 aa13.52□□□□□ -0.25
NPHP4-203ENST00000378169 TLR8Q9NR97 1041 aaKnown RBP13.52□□□□□ -0.25
NPHP4-203ENST00000378169 RRN3Q9NYV6 651 aa13.52□□□□□ -0.25
NPHP4-203ENST00000378169 AKAP10O43572 662 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 VNN1O95497 513 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SERPINF2P08697 491 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TFE3P19532 575 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-203ENST00000378169 RGS4P49798 205 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 CRYBB1P53674 252 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-203ENST00000378169 XYLT1Q86Y38 959 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 GPR152Q8TDT2 470 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 C7orf43Q8WVR3 580 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 MRPS31Q92665 395 aaKnown RBP13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SERPINB11Q96P15 392 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TSC22D3Q99576 134 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 HAUS8Q9BT25 410 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SLC24A3Q9HC58 644 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 LRRC4CQ9HCJ2 640 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 ARHGAP26Q9UNA1 814 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TSPAN1O60635 241 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 APOA4P06727 396 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 MATKP42679 507 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 ST8SIA6P61647 398 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 POU4F1Q01851 419 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 MBTD1Q05BQ5 628 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SPDYCQ5MJ68 293 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 LCLAT1Q6UWP7 414 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TMC7Q7Z402 723 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 KANSL3Q9P2N6 904 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TRMT6Q9UJA5 497 aaKnown RBP13.51□□□□□ -0.25
NPHP4-203ENST00000378169 MSCO60682 206 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 URODP06132 367 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 PRKAR2AP13861 404 aaKnown RBP13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SMPD1P17405 629 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 PGAM1P18669 254 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 GRK2P25098 689 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 CNTFP26441 200 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 PHEXP78562 749 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 RGMBQ6NW40 437 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 SLC4A11Q8NBS3 891 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 YME1L1Q96TA2 773 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 LHX5Q9H2C1 402 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 MINDY3Q9H8M7 445 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 NCKIPSDQ9NZQ3 722 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 ZMYM2Q9UBW7 1377 aa13.51□□□□□ -0.25
NPHP4-203ENST00000378169 TCRBV9S1A1TA0A576 114 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 NT5C1B-RDH14C9J2C7 533 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 H7C4K7 107 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 RPLP2P05387 115 aaKnown RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 ELNP15502 786 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 NFKB1P19838 968 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CAPRIN2Q6IMN6 1127 aaKnown RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MYLPFQ96A32 169 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MARCH2Q9P0N8 246 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CHADO15335 359 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CD151P48509 253 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 RHOAP61586 193 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MED21Q13503 144 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 FLOT2Q14254 428 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 PARP6Q2NL67 630 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 EML3Q32P44 896 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 UNC5AQ6ZN44 842 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 RNF148Q8N7C7 305 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 PCYOX1LQ8NBM8 494 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MAML3Q96JK9 1138 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 ZNF670Q9BS34 389 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 TMEM106CQ9BVX2 250 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 HMX1Q9NP08 348 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 SPATS2LQ9NUQ6 558 aaKnown RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MYH10P35580 1976 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 A0A0G2JLL6 359 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 ZNF197O14709 1029 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 IL10P22301 178 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CDKN2BP42772 138 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 KLC1Q07866 573 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 SLC39A4Q6P5W5 647 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 PRRT2Q7Z6L0 340 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 KIRREL3Q8IZU9 778 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CENPKQ9BS16 269 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 ATP13A1Q9HD20 1204 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 PTPRHQ9HD43 1115 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 WARS2Q9UGM6 360 aaKnown RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 TRHDEQ9UKU6 1024 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 SLC27A5Q9Y2P5 690 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 TRIM17Q9Y577 477 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 GLP2RO95838 553 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 UNGP13051 313 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 SLC1A6P48664 564 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MRPS5P82675 430 aaKnown RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 POLD3Q15054 466 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-203ENST00000378169 LGI2Q8N0V4 545 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 LPCAT1Q8NF37 534 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CCDC90BQ9GZT6 254 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 MYLK2Q9H1R3 596 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 RNF112Q9ULX5 631 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 CRYL1Q9Y2S2 319 aa13.5□□□□□ -0.25
NPHP4-203ENST00000378169 PHRF1Q9P1Y6 1649 aaKnown RBP13.49□□□□□ -0.25
NPHP4-203ENST00000378169 ALOX15BO15296 676 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms