RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CHRNA3P32297 505 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 MRPS25P82663 173 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 OTUD4Q01804 1114 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 RAP1GAP2Q684P5 730 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 NCBP2-AS2Q69YL0 99 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ANKRD54Q6NXT1 300 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 SYCE2Q6PIF2 218 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 C1orf228Q6PIY5 440 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 DENND1CQ8IV53 801 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 TTC13Q8NBP0 860 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 ACTL9Q8TC94 416 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 UBXN4Q92575 508 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 AZIN2Q96A70 460 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 LRRC1Q9BTT6 524 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 APOL5Q9BWW9 433 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 PRDM16Q9HAZ2 1276 aa20.54■□□□□ 0.88
CLN3-205ENST00000359984 MRPS23Q9Y3D9 190 aaKnown RBP20.54■□□□□ 0.88
CLN3-205ENST00000359984 SOX1O00570 391 aaPredicted RBP20.53■□□□□ 0.88
CLN3-205ENST00000359984 DCLK1O15075 740 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 LIASO43766 372 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 CEBPBP17676 345 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 TGM2P21980 687 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 HOXC13P31276 330 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 HTR7P34969 479 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 COILP38432 576 aaPredicted RBP20.53■□□□□ 0.88
CLN3-205ENST00000359984 SLC11A2P49281 568 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 ADGRE1Q14246 886 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 ERCC6LQ2NKX8 1250 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 RWDD4Q6NW29 188 aaKnown RBP20.53■□□□□ 0.88
CLN3-205ENST00000359984 MTERF4Q7Z6M4 381 aaKnown RBP20.53■□□□□ 0.88
CLN3-205ENST00000359984 ITFG1Q8TB96 612 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 TBC1D31Q96DN5 1066 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 STIM2Q9P246 746 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 AMACRQ9UHK6 382 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 AGO1Q9UL18 857 aaKnown RBP20.53■□□□□ 0.88
CLN3-205ENST00000359984 VANGL2Q9ULK5 521 aa20.53■□□□□ 0.88
CLN3-205ENST00000359984 SOBPA7XYQ1 873 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 GREM1O60565 184 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 KCNJ1P48048 391 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 TUBB4BP68371 445 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 FAM133BQ5BKY9 247 aaKnown RBP20.52■□□□□ 0.88
CLN3-205ENST00000359984 ACBD5Q5T8D3 534 aaPredicted RBP20.52■□□□□ 0.88
CLN3-205ENST00000359984 CCDC137Q6PK04 289 aaKnown RBP20.52■□□□□ 0.88
CLN3-205ENST00000359984 POTEHQ6S545 545 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 GPR149Q86SP6 731 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 CMTM8Q8IZV2 173 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 ING5Q8WYH8 240 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 P3H4Q92791 437 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 SMG9Q9H0W8 520 aaKnown RBP20.52■□□□□ 0.88
CLN3-205ENST00000359984 SLITRK6Q9H5Y7 841 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 DNPEPQ9ULA0 475 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 HEY1Q9Y5J3 304 aa20.52■□□□□ 0.88
CLN3-205ENST00000359984 PRRC2BQ5JSZ5 2229 aaKnown RBP20.52■□□□□ 0.87
CLN3-205ENST00000359984 TACR2P21452 398 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 FNTAP49354 379 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 GBE1Q04446 702 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 SLC10A2Q12908 348 aaPredicted RBP20.52■□□□□ 0.87
CLN3-205ENST00000359984 NOMO1Q15155 1222 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 FBXL22Q6P050 247 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 CHSY1Q86X52 802 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 SLC35B2Q8TB61 432 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 ZSWIM3Q96MP5 696 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 FRMD8P1Q9BZ68 369 aaPredicted RBP20.52■□□□□ 0.87
CLN3-205ENST00000359984 PCYOX1Q9UHG3 505 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 ARHGAP26Q9UNA1 814 aa20.52■□□□□ 0.87
CLN3-205ENST00000359984 RAD51CO43502 376 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 RHOXF2BP0C7M4 288 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 POU3F3P20264 500 aaPredicted RBP20.51■□□□□ 0.87
CLN3-205ENST00000359984 SLC6A4P31645 630 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 AVPR1AP37288 418 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 PAFAH1B3Q15102 231 aaKnown RBP20.51■□□□□ 0.87
CLN3-205ENST00000359984 C8orf74Q6P047 294 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 DRICH1Q6PGQ1 229 aaPredicted RBP20.51■□□□□ 0.87
CLN3-205ENST00000359984 IGSF8Q969P0 613 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 MYEOVQ96EZ4 313 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 RHOXF2Q9BQY4 288 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 EPC1Q9H2F5 836 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 CLEC1BQ9P126 229 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 CFAP97Q9P2B7 532 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 CDH22Q9UJ99 828 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 CLUHO75153 1309 aa20.51■□□□□ 0.87
CLN3-205ENST00000359984 IGLV3-10A0A075B6K4 115 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 LEFTY2O00292 366 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 IRAK1P51617 712 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 CBX2Q14781 532 aaPredicted RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 KCTD19Q17RG1 926 aaPredicted RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 TMCO3Q6UWJ1 677 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 LRRC31Q6UY01 552 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 Q6ZNB5 142 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 CCDC105Q8IYK2 499 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 NKD2Q969F2 451 aaPredicted RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 DTLQ9NZJ0 730 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 MPP6Q9NZW5 540 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 PPARGC1AQ9UBK2 798 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 CCL26Q9Y258 94 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 DRGXA6NNA5 263 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 SCAMP3O14828 347 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 MFSD11O43934 449 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 MAP3K6O95382 1288 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 HOXB8P17481 243 aaPredicted RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms