RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 PTGER3P43115 390 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 POLR2FP61218 127 aaKnown RBP19.05■□□□□ 0.64
CLN3-202ENST00000355477 CDK17Q00537 523 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 TYRO3Q06418 890 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 PTPRNQ16849 979 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 FKBP15Q5T1M5 1219 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 RAP1GAP2Q684P5 730 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 MBLAC2Q68D91 279 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 ARMCX6Q7L4S7 300 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 LPCAT2Q7L5N7 544 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 SLC26A9Q7LBE3 791 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 DGLUCYQ7Z3D6 616 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 LGI2Q8N0V4 545 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 DEFB119Q8N690 84 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 FIBINQ8TAL6 211 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 WFIKKN2Q8TEU8 576 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 BTN2A3PQ96KV6 586 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 MKRN2Q9H000 416 aaKnown RBP19.05■□□□□ 0.64
CLN3-202ENST00000355477 NLRC4Q9NPP4 1024 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLN3-202ENST00000355477 DDIT4Q9NX09 232 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 COX16Q9P0S2 106 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 CYP8B1Q9UNU6 501 aa19.05■□□□□ 0.64
CLN3-202ENST00000355477 LRRC10BA6NIK2 292 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 FOXD2O60548 495 aaPredicted RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 GFPT2O94808 682 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 HLA-EP13747 358 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 TACR2P21452 398 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 GABRB2P47870 512 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 JAM2P57087 298 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 SNX16P57768 344 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 ARID5AQ03989 594 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 STARD3Q14849 445 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 SYCP1Q15431 976 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 AASDHQ4L235 1098 aaPredicted RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 C2CD6Q53TS8 623 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 FSCBQ5H9T9 825 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 KIAA1324Q6UXG2 1013 aaKnown RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 SERPINA13PQ6UXR4 307 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 APTXQ7Z2E3 356 aaKnown RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 ERMP1Q7Z2K6 904 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 MFN1Q8IWA4 741 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 AHI1Q8N157 1196 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 CARNMT1Q8N4J0 409 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 C12orf50Q8NA57 414 aaPredicted RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 ZNF397Q8NF99 534 aaPredicted RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 NETO1Q8TDF5 533 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 EPS8L1Q8TE68 723 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 SLC20A1Q8WUM9 679 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 C18orf8Q96DM3 657 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 PRMT1Q99873 361 aaKnown RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 ADAM33Q9BZ11 813 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 PRDM16Q9HAZ2 1276 aa19.04■□□□□ 0.64
CLN3-202ENST00000355477 INTS6Q9UL03 887 aaKnown RBP19.04■□□□□ 0.64
CLN3-202ENST00000355477 DCDC2BA2VCK2 349 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 LGALS16A8MUM7 142 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 PATE3B3GLJ2 98 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 ZNF217O75362 1048 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 DAB1O75553 588 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 EPHX1P07099 455 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 CHRNB2P17787 502 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 TFE3P19532 575 aaPredicted RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 CDK11BP21127 795 aaKnown RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 COPAP53621 1224 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 RNASE9P60153 205 aaKnown RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 RPL6Q02878 288 aaKnown RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 LMAN2Q12907 356 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 NME3Q13232 169 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 E2F5Q15329 346 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 OTUD1Q5VV17 481 aaPredicted RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 MMS22LQ6ZRQ5 1243 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 CYP2U1Q7Z449 544 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 CHSY1Q86X52 802 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 ERICH1Q86X53 443 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 XYLT1Q86Y38 959 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 ZDHHC17Q8IUH5 632 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 AOPEPQ8N6M6 819 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 ZNF366Q8N895 744 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 ATP6V0D2Q8N8Y2 350 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 CPA5Q8WXQ8 436 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 PIGKQ92643 395 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 TMEM245Q9H330 911 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 TMEM74BQ9NUR3 256 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 NOCTQ9UK39 431 aaKnown RBP19.03■□□□□ 0.64
CLN3-202ENST00000355477 PLA2G4CQ9UP65 541 aa19.03■□□□□ 0.64
CLN3-202ENST00000355477 SLC30A4O14863 429 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 SYNCRIPO60506 623 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 LSM8O95777 96 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 DLDP09622 509 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 ATP1A3P13637 1013 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 POLR2EP19388 210 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 CCR1P32246 355 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 NOS2P35228 1153 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 SOX5P35711 763 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 MATKP42679 507 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 NOMO3P69849 1222 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 UBXN1Q04323 297 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 ANO6Q4KMQ2 910 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 FNDC3BQ53EP0 1204 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 SPDYCQ5MJ68 293 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms