RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DIAPH2O60879 1101 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 OCRLQ01968 901 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 PAFAH1B3Q15102 231 aaKnown RBP22.4■■□□□ 1.18
SHMT1-202ENST00000352886 TEX44Q53QW1 395 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 ARID3BQ8IVW6 561 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-202ENST00000352886 CDKL2Q92772 493 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 NSL1Q96IY1 281 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 TUBB6Q9BUF5 446 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 ULBP1Q9BZM6 244 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 TSPYL2Q9H2G4 693 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-202ENST00000352886 CRTAC1Q9NQ79 661 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 FYNP06241 537 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 BPGMP07738 259 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 GM2AP17900 193 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 PGAM1P18669 254 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 FKBP1BP68106 108 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 IRF5Q13568 498 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 CRYMQ14894 314 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 TLDC1Q6P9B6 456 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 SENP8Q96LD8 212 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 KATNAL1Q9BW62 490 aa22.4■■□□□ 1.18
SHMT1-202ENST00000352886 NKX1-2Q9UD57 310 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-202ENST00000352886 FAM72CH0Y354 149 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 DCLK1O15075 740 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 PEX11AO75192 247 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 SMAD1Q15797 465 aaKnown RBP22.39■■□□□ 1.18
SHMT1-202ENST00000352886 FAM72AQ5TYM5 149 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 FAM72DQ6L9T8 149 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 PACS1Q6VY07 963 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 ALYREFQ86V81 257 aaKnown RBP22.39■■□□□ 1.18
SHMT1-202ENST00000352886 FAM72BQ86X60 149 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 SYBUQ9NX95 663 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 KCNK4Q9NYG8 393 aa22.39■■□□□ 1.18
SHMT1-202ENST00000352886 YJEFN3A6XGL0 299 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 E7ENQ6 273 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 KCNK1O00180 336 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 FCHO1O14526 889 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 ADRA1BP35368 520 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 MLH1P40692 756 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 IRX4P78413 519 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 IFRD2Q12894 506 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-202ENST00000352886 PID1Q7Z2X4 250 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 CCNJLQ8IV13 435 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 KCNK16Q96T55 309 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 BTBD10Q9BSF8 475 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 CADM1Q9BY67 442 aaKnown RBP22.39■■□□□ 1.17
SHMT1-202ENST00000352886 NMUR2Q9GZQ4 415 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 RNPEPL1Q9HAU8 725 aa22.39■■□□□ 1.17
SHMT1-202ENST00000352886 TIMM13Q9Y5L4 95 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-202ENST00000352886 ALDOAP04075 364 aaKnown RBP22.38■■□□□ 1.17
SHMT1-202ENST00000352886 KITP10721 976 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 GPRIN1Q7Z2K8 1008 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 C2orf69Q8N8R5 385 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 C20orf27Q9GZN8 174 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 CXorf56Q9H5V9 222 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 ANLNQ9NQW6 1124 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 ARMCX1Q9P291 453 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 MARCOQ9UEW3 520 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-202ENST00000352886 PSAT1Q9Y617 370 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 TPP1O14773 563 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 BIRC5O15392 142 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 AP1G2O75843 785 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 GNAT1P11488 350 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 ERCC2P18074 760 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 CYP2B6P20813 491 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 CALB2P22676 271 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 AFF1P51825 1210 aaKnown RBP22.38■■□□□ 1.17
SHMT1-202ENST00000352886 DAOAP59103 153 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 ZCCHC23Q6ZST2 131 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 GSTCDQ8NEC7 633 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 RAB3IL1Q8TBN0 382 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 N4BP2L2Q92802 583 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-202ENST00000352886 SYT15Q9BQS2 421 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 DENND2DQ9H6A0 471 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-202ENST00000352886 XPNPEP3Q9NQH7 507 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 IL1RAPL1Q9NZN1 696 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 IGSF9Q9P2J2 1179 aa22.38■■□□□ 1.17
SHMT1-202ENST00000352886 I6L893 689 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 CELF2O95319 508 aaKnown RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 OLIG2Q13516 323 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 KRT72Q14CN4 511 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 HSF5Q4G112 596 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 CTU1Q7Z7A3 348 aaKnown RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 FAM35AQ86V20 835 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 CRLF3Q8IUI8 442 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 PCED1BQ96HM7 432 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 SLC9A7Q96T83 725 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 SMOQ99835 787 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 NAT9Q9BTE0 207 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 WDR6Q9NNW5 1121 aaKnown RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 KLHL8Q9P2G9 620 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 MYBPHLA2RUH7 354 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 SNNO75324 88 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 FBXO21O94952 628 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 AMHP03971 560 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 FAM163BP0C2L3 166 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 NCAM1P13591 858 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 CACNA2D1P54289 1103 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 FSCN1Q16658 493 aaKnown RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms