RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PANK4Q9NVE7 773 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RCOR1Q9UKL0 485 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 NDRG2Q9UN36 371 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DRG1Q9Y295 367 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 GDAQ9Y2T3 454 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ADGRG1Q9Y653 693 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 COMMD3-BMI1R4GMX3 469 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 TRAV19A0A0A6YYK7 116 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 UBE2QL1A1L167 161 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SLC15A5A6NIM6 579 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RASA4BC9J798 803 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ADM5C9JUS6 153 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 K7ENM7 598 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 IFRD1O00458 451 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MGRN1O60291 552 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 HAUS5O94927 633 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SFTPCP11686 197 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RRM1P23921 792 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 IL12RB1P42701 662 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CDH4P55283 916 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 GRAMD1BQ3KR37 738 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL26Q53HC5 615 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DEPDC1Q5TB30 811 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SH3BP5LQ7L8J4 393 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ADCK1Q86TW2 530 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DIS3L2Q8IYB7 885 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 LINC00471Q8N535 108 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 LINC00116Q8NCU8 138 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 FNIP1Q8TF40 1166 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RFFLQ8WZ73 363 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ULK4Q96C45 1275 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RHBDF1Q96CC6 855 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ACCSQ96QU6 501 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 UBXN6Q9BZV1 441 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ZWILCHQ9H900 591 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ZCCHC17Q9NP64 241 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 NCKIPSDQ9NZQ3 722 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 GHRLQ9UBU3 117 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SLC24A2Q9UI40 661 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ADAM21Q9UKJ8 722 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 TRIOBPQ9H2D6 2365 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MIA3Q5JRA6 1907 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ABHD14A-ACY1A0A1B0GW23 586 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 NARSO43776 548 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 GLUD1P00367 558 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CSF1RP07333 972 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 GZMAP12544 262 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 HTR7P34969 479 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ARHGAP22Q7Z5H3 698 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC6Q86X45 466 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SAMD14Q8IZD0 417 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL23Q8NBE8 558 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 EME1Q96AY2 570 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ATP6V1G3Q96LB4 118 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ZSCAN32Q9NX65 697 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 THUMPD1Q9NXG2 353 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CROTQ9UKG9 612 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MINPP1Q9UNW1 487 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 AP1M2Q9Y6Q5 423 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF532Q9HCE3 1301 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MYH14Q7Z406 1995 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 USP27XA6NNY8 438 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CLOCKO15516 846 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RBP1P09455 135 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 PLA2G4BP0C869 781 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 RNH1P13489 461 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 FDFT1P37268 417 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ADCYAP1R1P41586 468 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 POLD2P49005 469 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CCL23P55773 120 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ERVK-21P61565 698 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 TXNL4AP83876 142 aaKnown RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 CDH18Q13634 790 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ARL6IP1Q15041 203 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 LLGL1Q15334 1064 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ZSWIM7Q19AV6 140 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SV2CQ496J9 727 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SPDYAQ5MJ70 313 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 FAM46CQ5VWP2 391 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 PLPP4Q5VZY2 271 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 NAPEPLDQ6IQ20 393 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ERAP2Q6P179 960 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 PET117Q6UWS5 81 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 BLIDQ8IZY5 108 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DNAAF3Q8N9W5 541 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 ACMSDQ8TDX5 336 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJB3Q8WWF6 145 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SPIRE2Q8WWL2 714 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 NKD2Q969F2 451 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MED15Q96RN5 788 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 VRK1Q99986 396 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 UGT2B28Q9BY64 529 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 IRX2Q9BZI1 471 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 COPS7BQ9H9Q2 264 aaPredicted RBP3.36□□□□□ -1.87
CSMD3-202ENST00000339701 C14orf105Q9NVL8 296 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 VPS54Q9P1Q0 977 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJB4Q9UDY4 337 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 MAFFQ9ULX9 164 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 SPDYE5A6NIY4 337 aa3.36□□□□□ -1.87
CSMD3-202ENST00000339701 TMX2-CTNND1H3BSU7 103 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms