RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ENKURQ8TC29 256 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 TADA1Q96BN2 335 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 GINS4Q9BRT9 223 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 ROGDIQ9GZN7 287 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 ZCWPW1Q9H0M4 648 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 CHST12Q9NRB3 414 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 DDIT4Q9NX09 232 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 SIK3Q9Y2K2 1263 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 SLC30A1Q9Y6M5 507 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 SLIT3O75094 1523 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CYP3A7-CYP3A51PA0A087WV96 503 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SNPHO15079 494 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PRPF4O43172 522 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS39-201ENST00000318006 CXCL8P10145 99 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CYP3A7P24462 503 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAAP100Q0VG06 881 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 MPP3Q13368 585 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PDZK1Q5T2W1 519 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 TRIQKQ629K1 86 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CYP2R1Q6VVX0 501 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PTF1AQ7RTS3 328 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ATG16L2Q8NAA4 619 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 BHLHE22Q8NFJ8 381 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 TMEM176AQ96HP8 235 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ABHD8Q96I13 439 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 GLT1D1Q96MS3 346 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SEPT5Q99719 369 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 SEMA6AQ9H2E6 1030 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CYP4F12Q9HCS2 524 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 TIMMDC1Q9NPL8 285 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 BTBD3Q9Y2F9 522 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 MRC1P22897 1456 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ZC3H4Q9UPT8 1303 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 DPPA5A6NC42 116 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 C2CD2LO14523 706 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ODC1P11926 461 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 INSRRP14616 1297 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ACO1P21399 889 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 CCT8P50990 548 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ACAP1Q15027 740 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 MGAT5BQ3V5L5 792 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SGO1Q5FBB7 561 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 KYAT3Q6YP21 454 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 MAP4K3Q8IVH8 894 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 MCOLN2Q8IZK6 566 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ZSCAN18Q8TBC5 510 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 BORCS5Q969J3 196 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CPB2Q96IY4 423 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 TRIM8Q9BZR9 551 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 IARS2Q9NSE4 1012 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 SPATA2Q9UM82 520 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAM25AB3EWG3 89 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAM25CB3EWG5 89 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAM25GB3EWG6 89 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 IDH3BO43837 385 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PSMD10O75832 226 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 TSPAN9O75954 239 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 B3GAT3O94766 335 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 DDNO94850 711 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 TALDO1P37837 337 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 CDK7P50613 346 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 RPS6KA3P51812 740 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SLC25A3Q00325 362 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PLIN5Q00G26 463 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FASTKQ14296 549 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAM45BPQ6NSW5 357 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 ZPBP2Q6X784 338 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 STK32CQ86UX6 486 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SYTL1Q8IYJ3 562 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS39-201ENST00000318006 OLFM1Q99784 485 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PCYOX1Q9UHG3 505 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 RAD51BO15315 384 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 SP100P23497 879 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 BCAT1P54687 386 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 EVX2Q03828 476 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 VAC14Q08AM6 782 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 C1DQ13901 141 aaKnown RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 TAF5Q15542 800 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 IL17AQ16552 155 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 OTOAQ7RTW8 1153 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 FAM13CQ8NE31 585 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 RMND5AQ9H871 391 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 C6orf203Q9P0P8 240 aaPredicted RBP11.76□□□□□ -0.53
VPS39-201ENST00000318006 NALCNQ8IZF0 1738 aa11.76□□□□□ -0.53
VPS39-201ENST00000318006 PIK3R1P27986 724 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GP5P40197 560 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 RAP1GAPP47736 663 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 FOLH1Q04609 750 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 FUT2Q10981 343 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CYP51A1Q16850 503 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 TRIM71Q2Q1W2 868 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 PERM1Q5SV97 790 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 WDR59Q6PJI9 974 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 SIX5Q8N196 739 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 ARL10Q8N8L6 244 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GLIS3Q8NEA6 775 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 UBASH3BQ8TF42 649 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 FAM172AQ8WUF8 416 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms