RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 UNC45BQ8IWX7 931 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 SIX6OS1Q8N1H7 587 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 SCML4Q8N228 414 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 CYB5D2Q8WUJ1 264 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 ACE2Q9BYF1 805 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 PRSS16Q9NQE7 514 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 KIAA1257Q9ULG3 409 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 TPX2Q9ULW0 747 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 COL5A1P20908 1838 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 A0A1B0GVL5 298 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 TYW5A2RUC4 315 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 VILLO15195 856 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 YKT6O15498 198 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 C1SP09871 688 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 SETSIPP0DME0 302 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 EPB41P11171 864 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 HNF1BP35680 557 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 SYKP43405 635 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 SLC11A2P49281 568 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 CAMK2BQ13554 666 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 GOLGA7BQ2TAP0 167 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 NUGGCQ68CJ6 796 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 BHLHA9Q7RTU4 235 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 KDM1BQ8NB78 822 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 KCTD13Q8WZ19 329 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 SEMA4DQ92854 862 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 CNGB3Q9NQW8 809 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 TSPAN16Q9UKR8 245 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 HPSEQ9Y251 543 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 PCDHGA1Q9Y5H4 931 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 KALRNO60229 2985 aa15.38■□□□□ 0.05
CCDC88B-201ENST00000301897 LRRC72A6NJI9 287 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 H0Y8X5 98 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 CETN3O15182 167 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 ASLP04424 464 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 ADIGQ0VDE8 80 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 ZCWPW2Q504Y3 356 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 KIAA0895LQ68EN5 471 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 MSANTD2Q6P1R3 559 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 CCDC117Q8IWD4 279 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 ZNF366Q8N895 744 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 GANCQ8TET4 914 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 EDEM1Q92611 657 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 AZIN2Q96A70 460 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 CCDC34Q96HJ3 373 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 DDX50Q9BQ39 737 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 RSPH9Q9H1X1 276 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 PABPC3Q9H361 631 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 SFMBT1Q9UHJ3 866 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 SLCO1B1Q9Y6L6 691 aa15.37■□□□□ 0.05
CCDC88B-201ENST00000301897 A0A1B0GTQ1 180 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 A0A1W2PPC4 97 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 YJEFN3A6XGL0 299 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 E7ENQ6 273 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 VDRP11473 427 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 CD19P15391 556 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 DPYDQ12882 1025 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 CUL2Q13617 745 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 ARID5BQ14865 1188 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 PIK3R6Q5UE93 754 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 HSCBQ8IWL3 235 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 HJURPQ8NCD3 748 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 FIBINQ8TAL6 211 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 IRGQQ8WZA9 623 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 TTC17Q96AE7 1141 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 NXPE2Q96DL1 559 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 FBXL12Q9NXK8 326 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 MAPK8IP1Q9UQF2 711 aa15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 TP53BP1Q12888 1972 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-201ENST00000301897 FAM237AA0A1B0GTK4 181 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 TULP2O00295 520 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 TBL1XO60907 577 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 IGLV3-27P01718 113 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 IGHV4-34P06331 123 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 ABCB4P21439 1286 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 TBXAS1P24557 533 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 ABCG1P45844 678 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 DAOAP59103 153 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 HNRNPA1L2Q32P51 320 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 CCDC157Q569K6 752 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 C6orf118Q5T5N4 469 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 DHRS13Q6UX07 377 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 MFN1Q8IWA4 741 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 OR2T34Q8NGX1 318 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 NDRG1Q92597 394 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 TATDN2Q93075 761 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 SPATA32Q96LK8 384 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 UBL7Q96S82 380 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 ELF4Q99607 663 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 ORAI3Q9BRQ5 295 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 ADAMTS1Q9UHI8 967 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 FZD4Q9ULV1 537 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 COQ4Q9Y3A0 265 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 PTPRQQ9UMZ3 2332 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 BPTFQ12830 3046 aa15.35■□□□□ 0.05
CCDC88B-201ENST00000301897 TARSL2A2RTX5 802 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 FAM149AA5PLN7 773 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 O00370 1275 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 KCNK3O14649 394 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 ENC1O14682 589 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms