RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PDK1Q15118 436 aa16.03■□□□□ 0.16
LSM6-201ENST00000296581 PRKD1Q15139 912 aaPredicted RBP16.03■□□□□ 0.16
LSM6-201ENST00000296581 UBAP2Q5T6F2 1119 aaKnown RBP16.03■□□□□ 0.16
LSM6-201ENST00000296581 MANEALQ5VSG8 457 aa16.03■□□□□ 0.16
LSM6-201ENST00000296581 PDZD4Q76G19 769 aaPredicted RBP16.03■□□□□ 0.16
LSM6-201ENST00000296581 GIPC2Q8TF65 315 aa16.03■□□□□ 0.16
LSM6-201ENST00000296581 TFB1MQ8WVM0 346 aaKnown RBP16.03■□□□□ 0.16
LSM6-201ENST00000296581 RBM15Q96T37 977 aaKnown RBP eCLIP16.03■□□□□ 0.16
LSM6-201ENST00000296581 MCOLN1Q9GZU1 580 aa16.03■□□□□ 0.16
LSM6-201ENST00000296581 C5orf60A6NFR6 353 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 GJB5O95377 273 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 SEC24AO95486 1093 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 TTC4O95801 387 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 URODP06132 367 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 HOXC13P31276 330 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 NRG1Q02297 640 aaPredicted RBP16.02■□□□□ 0.16
LSM6-201ENST00000296581 FPGSQ05932 587 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 RAB33AQ14088 237 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 TTMPQ5BVD1 217 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 ARTNQ5T4W7 220 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 ANKRD22Q5VYY1 191 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 FCRL2Q96LA5 508 aaPredicted RBP16.02■□□□□ 0.16
LSM6-201ENST00000296581 UBE2OQ9C0C9 1292 aaKnown RBP16.02■□□□□ 0.16
LSM6-201ENST00000296581 TMBIM4Q9HC24 238 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 DNAJC17Q9NVM6 304 aaKnown RBP16.02■□□□□ 0.16
LSM6-201ENST00000296581 SH3BP1Q9Y3L3 701 aa16.02■□□□□ 0.16
LSM6-201ENST00000296581 LINC00271P0C7V0 271 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 SLC2A3P11169 496 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 VAV1P15498 845 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 KCNJ11Q14654 390 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 HEATR6Q6AI08 1181 aaKnown RBP16.02■□□□□ 0.15
LSM6-201ENST00000296581 ZNF276Q8N554 614 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 LRRN4Q8WUT4 740 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 HTR3CQ8WXA8 447 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 BADQ92934 168 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 NINJ2Q9NZG7 142 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 STK39Q9UEW8 545 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 PRKAG2Q9UGJ0 569 aa16.02■□□□□ 0.15
LSM6-201ENST00000296581 ZBBXA8MT70 800 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 ZNF189O75820 626 aaPredicted RBP16.01■□□□□ 0.15
LSM6-201ENST00000296581 SHBGP04278 402 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 EPHB2P29323 1055 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 MAGEA6P43360 314 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 TBX4P57082 545 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 VPS52Q8N1B4 723 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 CCDC33Q8N5R6 958 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 OVCA2Q8WZ82 227 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 LGMNQ99538 433 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 TMEM109Q9BVC6 243 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 TCRBV7S3A2A0A539 114 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 CHADO15335 359 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 NCAM2O15394 837 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 TMEM63AO94886 807 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 SERPINB6P35237 376 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 MAGEA4P43358 317 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 BASP1P80723 227 aaKnown RBP16.01■□□□□ 0.15
LSM6-201ENST00000296581 EFEMP1Q12805 493 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 TRIP4Q15650 581 aaPredicted RBP16.01■□□□□ 0.15
LSM6-201ENST00000296581 NPWQ8N729 165 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 CCDC110Q8TBZ0 833 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 MIEF2Q96C03 454 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 C1orf74Q96LT6 269 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 PRDM12Q9H4Q4 367 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 FNIP2Q9P278 1114 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 PCDHB12Q9Y5F1 795 aa16.01■□□□□ 0.15
LSM6-201ENST00000296581 GOLGA6L10A6NI86 522 aa16■□□□□ 0.15
LSM6-201ENST00000296581 ALOX15BO15296 676 aa16■□□□□ 0.15
LSM6-201ENST00000296581 LILRB3O75022 631 aa16■□□□□ 0.15
LSM6-201ENST00000296581 MYZAPP0CAP1 466 aa16■□□□□ 0.15
LSM6-201ENST00000296581 IFFO1Q0D2I5 559 aa16■□□□□ 0.15
LSM6-201ENST00000296581 CBLBQ13191 982 aa16■□□□□ 0.15
LSM6-201ENST00000296581 KYNUQ16719 465 aa16■□□□□ 0.15
LSM6-201ENST00000296581 TMEM240Q5SV17 173 aa16■□□□□ 0.15
LSM6-201ENST00000296581 SNX30Q5VWJ9 437 aa16■□□□□ 0.15
LSM6-201ENST00000296581 CENPUQ71F23 418 aa16■□□□□ 0.15
LSM6-201ENST00000296581 FIBCD1Q8N539 461 aa16■□□□□ 0.15
LSM6-201ENST00000296581 TAB3Q8N5C8 712 aaPredicted RBP16■□□□□ 0.15
LSM6-201ENST00000296581 PDZD8Q8NEN9 1154 aa16■□□□□ 0.15
LSM6-201ENST00000296581 GIMAP7Q8NHV1 300 aa16■□□□□ 0.15
LSM6-201ENST00000296581 BRD8Q9H0E9 1235 aa16■□□□□ 0.15
LSM6-201ENST00000296581 SIK2Q9H0K1 926 aa16■□□□□ 0.15
LSM6-201ENST00000296581 SAYSD1Q9NPB0 183 aa16■□□□□ 0.15
LSM6-201ENST00000296581 RAB6BQ9NRW1 208 aa16■□□□□ 0.15
LSM6-201ENST00000296581 XPO7Q9UIA9 1087 aaKnown RBP16■□□□□ 0.15
LSM6-201ENST00000296581 HS3ST4Q9Y661 456 aa16■□□□□ 0.15
LSM6-201ENST00000296581 A0A0A0MRY4 1105 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 E7ESA3 106 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 EIF3HO15372 352 aaKnown RBP eCLIP15.99■□□□□ 0.15
LSM6-201ENST00000296581 FGF10O15520 208 aaPredicted RBP15.99■□□□□ 0.15
LSM6-201ENST00000296581 TBX18O95935 607 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 IGLV3-27P01718 113 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 HMGA1P17096 107 aaKnown RBP15.99■□□□□ 0.15
LSM6-201ENST00000296581 MLLT6P55198 1093 aaPredicted RBP15.99■□□□□ 0.15
LSM6-201ENST00000296581 GAD2Q05329 585 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 GALNT2Q10471 571 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 HIF1AQ16665 826 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 TP53INP2Q8IXH6 220 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 CLP1Q92989 425 aaKnown RBP15.99■□□□□ 0.15
LSM6-201ENST00000296581 TBC1D31Q96DN5 1066 aa15.99■□□□□ 0.15
LSM6-201ENST00000296581 P2RY11Q96G91 374 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms