RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 UNC5CO95185 931 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 ERCC2P18074 760 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 SERPINB4P48594 390 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 ASRGL1Q7L266 308 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 BHLHA9Q7RTU4 235 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 METTL23Q86XA0 190 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 OXNAD1Q96HP4 312 aaPredicted RBP24.66■■□□□ 1.54
TRIM54-201ENST00000296098 ARHGAP39Q9C0H5 1083 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 CSNK1G1Q9HCP0 422 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 IGSF9Q9P2J2 1179 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 GABRQQ9UN88 632 aa24.66■■□□□ 1.54
TRIM54-201ENST00000296098 I6L893 689 aaPredicted RBP24.65■■□□□ 1.54
TRIM54-201ENST00000296098 MGEA5O60502 916 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 ZNF623O75123 536 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 NEFHP12036 1026 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 HCAR3P49019 387 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 MNAT1P51948 309 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 NKX3-2P78367 333 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 IFRD2Q12894 506 aaPredicted RBP24.65■■□□□ 1.54
TRIM54-201ENST00000296098 CDHR3Q6ZTQ4 885 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 TP53INP2Q8IXH6 220 aa24.65■■□□□ 1.54
TRIM54-201ENST00000296098 TDRD15B5MCY1 1934 aaKnown RBP24.65■■□□□ 1.54
TRIM54-201ENST00000296098 COL4A4P53420 1690 aaPredicted RBP24.64■■□□□ 1.54
TRIM54-201ENST00000296098 C2CD2LO14523 706 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 ADAMTS4O75173 837 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 ALDH1A2O94788 518 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 F9P00740 461 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 POMCP01189 267 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 PGAM1P18669 254 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 IBSPP21815 317 aaPredicted RBP24.64■■□□□ 1.54
TRIM54-201ENST00000296098 SESN2P58004 480 aaPredicted RBP24.64■■□□□ 1.54
TRIM54-201ENST00000296098 NLRP9Q7RTR0 991 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 CCNJLQ8IV13 435 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 IRGQQ8WZA9 623 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 ARHGEF3Q9NR81 526 aa24.64■■□□□ 1.54
TRIM54-201ENST00000296098 AMHP03971 560 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 BGNP21810 368 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 MGAT1P26572 445 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 CRADDP78560 199 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 OVGP1Q12889 678 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 PAN2Q504Q3 1202 aaKnown RBP24.64■■□□□ 1.53
TRIM54-201ENST00000296098 INTS6LQ5JSJ4 861 aaKnown RBP24.64■■□□□ 1.53
TRIM54-201ENST00000296098 MARK2Q7KZI7 788 aaKnown RBP24.64■■□□□ 1.53
TRIM54-201ENST00000296098 EDEM1Q92611 657 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 PGBD4Q96DM1 585 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 ACBD6Q9BR61 282 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 COLEC11Q9BWP8 271 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 XPNPEP3Q9NQH7 507 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 PLLPQ9Y342 182 aa24.64■■□□□ 1.53
TRIM54-201ENST00000296098 FAM155AB1AL88 458 aaPredicted RBP24.63■■□□□ 1.53
TRIM54-201ENST00000296098 NCAM2O15394 837 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 ATP5HO75947 161 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 B3GAT3O94766 335 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 CYP11A1P05108 521 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 ASGR1P07306 291 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 CNTFP26441 200 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 KIF2BQ8N4N8 673 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 TRIM55Q9BYV6 548 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 PIH1D1Q9NWS0 290 aaKnown RBP24.63■■□□□ 1.53
TRIM54-201ENST00000296098 KLHL8Q9P2G9 620 aaPredicted RBP24.63■■□□□ 1.53
TRIM54-201ENST00000296098 TRIM33Q9UPN9 1127 aa24.63■■□□□ 1.53
TRIM54-201ENST00000296098 MYO18AQ92614 2054 aaKnown RBP24.63■■□□□ 1.53
TRIM54-201ENST00000296098 KCNK1O00180 336 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 ATP6V1G2O95670 118 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 BRCC3P46736 316 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 FLT3LGP49771 235 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 NIPAL4Q0D2K0 466 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 GRIK3Q13003 919 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 DSC3Q14574 896 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 MROH9Q5TGP6 573 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 BSPRYQ5W0U4 402 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 FAM171BQ6P995 826 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 PID1Q7Z2X4 250 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 RFWD2Q8NHY2 731 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 EPAS1Q99814 870 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 NAT9Q9BTE0 207 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 DMAP1Q9NPF5 467 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-201ENST00000296098 PCMTD2Q9NV79 361 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-201ENST00000296098 HMX2A2RU54 273 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 KLF11O14901 512 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 CA12O43570 354 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 IL1BP01584 269 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 MYCNP04198 464 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-201ENST00000296098 PTPN3P26045 913 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 CXCR3P49682 368 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 ZNF135P52742 658 aaPredicted RBP24.62■■□□□ 1.53
TRIM54-201ENST00000296098 PPIDQ08752 370 aaKnown RBP24.62■■□□□ 1.53
TRIM54-201ENST00000296098 TRIM32Q13049 653 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 CRYMQ14894 314 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 NPWQ8N729 165 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 ARNTL2Q8WYA1 636 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 CDKL2Q92772 493 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 SLC13A1Q9BZW2 595 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 DCTN4Q9UJW0 460 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 DSEQ9UL01 958 aa24.62■■□□□ 1.53
TRIM54-201ENST00000296098 A0A0U1RQF3 1178 aa24.61■■□□□ 1.53
TRIM54-201ENST00000296098 CHUKO15111 745 aa24.61■■□□□ 1.53
TRIM54-201ENST00000296098 BDNFP23560 247 aa24.61■■□□□ 1.53
TRIM54-201ENST00000296098 NAB1Q13506 487 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms