RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 COPEO14579 308 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 CHADO15335 359 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 FAM189A1O60320 539 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 KLHL2O95198 593 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 VNN1O95497 513 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 INHBAP08476 426 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 SNRPAP09012 282 aaKnown RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 PRKCHP24723 683 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MAGEA6P43360 314 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 HTRA4P83105 476 aaPredicted RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 CREB5Q02930 508 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MAP7Q14244 749 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MXD4Q14582 209 aaPredicted RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 ATP13A4Q4VNC1 1196 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 RBM12BQ8IXT5 1001 aaKnown RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 CRIPAKQ8N1N5 446 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 RNF149Q8NC42 400 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MCPH1Q8NEM0 835 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 E2F7Q96AV8 911 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 SRPK1Q96SB4 655 aaKnown RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 TMEM121Q9BTD3 319 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 ZNF576Q9H609 170 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 SUDS3Q9H7L9 328 aaPredicted RBP10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MINDY3Q9H8M7 445 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 MTMR10Q9NXD2 777 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 ARHGAP28Q9P2N2 729 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 PCDHGC3Q9UN70 934 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 PCDHB4Q9Y5E5 795 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 IKBKGQ9Y6K9 419 aa10.64□□□□□ -0.71
UPF3B-201ENST00000276201 FAM237BA0A1B0GVD1 139 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 RNASEH1O60930 286 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TMEM63AO94886 807 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PRDX6P30041 224 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 AP3M2P53677 418 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 MED21Q13503 144 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 EFHC1Q5JVL4 640 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 FAM102BQ5T8I3 360 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 KAZNQ674X7 775 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 DNAJC24Q6P3W2 148 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TIFABQ6ZNK6 161 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 FAM43BQ6ZT52 329 aaPredicted RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 LRRC39Q96DD0 335 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PI4K2AQ9BTU6 479 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 KLHL4Q9C0H6 718 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 RGS18Q9NS28 235 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TCRBV9S1A1TA0A576 114 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 C9IYK1 514 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 DENRO43583 198 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 KRT37O76014 449 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PYGBP11216 843 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PHKA2P46019 1235 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 OTUD4Q01804 1114 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 SLC25A11Q02978 314 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 BST1Q10588 318 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 KCNJ11Q14654 390 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 ACAP1Q15027 740 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 C1orf146Q5VVC0 180 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TDRD10Q5VZ19 366 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PPP2R2DQ66LE6 453 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 SPRED2Q7Z698 418 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 ALYREFQ86V81 257 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 CRLF3Q8IUI8 442 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 NPAS4Q8IUM7 802 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 ACTL9Q8TC94 416 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 SP7Q8TDD2 431 aaPredicted RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 BSNDQ8WZ55 320 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TTC17Q96AE7 1141 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 DGCR14Q96DF8 476 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 GUCD1Q96NT3 240 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 CGRRF1Q99675 332 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 INO80BQ9C086 356 aaPredicted RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 SLC28A3Q9HAS3 691 aa10.63□□□□□ -0.71
UPF3B-201ENST00000276201 PPARGC1AQ9UBK2 798 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 XPO7Q9UIA9 1087 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 HBS1LQ9Y450 684 aaKnown RBP10.63□□□□□ -0.71
UPF3B-201ENST00000276201 TTLL13PA6NNM8 815 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 E5RJQ4 531 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 APOC4-APOC2K7ER74 178 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 BANF1O75531 89 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CALCAP01258 141 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 APOC2P02655 101 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ENO1P06733 434 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 IMPDH2P12268 514 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 VAV1P15498 845 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 L1CAMP32004 1257 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CRHR1P34998 444 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RPL7AP62424 266 aaKnown RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 POU5F1BQ06416 359 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 DPYSL3Q14195 570 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 GRIN2CQ14957 1233 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 HP1BP3Q5SSJ5 553 aaPredicted RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CYS1Q717R9 158 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 CATSPER4Q7RTX7 472 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 IFNLR1Q8IU57 520 aaPredicted RBP10.62□□□□□ -0.71
UPF3B-201ENST00000276201 MARVELD2Q8N4S9 558 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 TMEM35BQ8NCS4 154 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 ACTRT2Q8TDY3 377 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RSAD2Q8WXG1 361 aa10.62□□□□□ -0.71
UPF3B-201ENST00000276201 RTP4Q96DX8 246 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms