RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ABCB8Q9NUT2 735 aa14.97□□□□□ -0.01
HMGN3-201ENST00000275036 ASNSD1Q9NWL6 643 aa14.97□□□□□ -0.01
HMGN3-201ENST00000275036 LIMA1Q9UHB6 759 aaKnown RBP14.97□□□□□ -0.01
HMGN3-201ENST00000275036 NYNRINQ9P2P1 1898 aaKnown RBP14.97□□□□□ -0.01
HMGN3-201ENST00000275036 CDX4O14627 284 aaPredicted RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 MAP3K13O43283 966 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 HSF2BPO75031 334 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 GLI1P08151 1106 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 CD70P32970 193 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 COPAP53621 1224 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 JAM2P57087 298 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 SLC6A3Q01959 620 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 RPL6Q02878 288 aaKnown RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 EIF4HQ15056 248 aaKnown RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 MS4A13Q5J8X5 152 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 EFHC1Q5JVL4 640 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 MPP7Q5T2T1 576 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 OTUD1Q5VV17 481 aaPredicted RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 LYSMD4Q5XG99 296 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 CHST9Q7L1S5 443 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 SLC26A9Q7LBE3 791 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 CFAP52Q8N1V2 620 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 EPS8L1Q8TE68 723 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 CYB5D2Q8WUJ1 264 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 UCMAQ8WVF2 138 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 NOX5Q96PH1 765 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 IRX2Q9BZI1 471 aaPredicted RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 FSCN3Q9NQT6 498 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 FAM207AQ9NSI2 230 aaPredicted RBP14.96□□□□□ -0.01
HMGN3-201ENST00000275036 STIM2Q9P246 746 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 GGA2Q9UJY4 613 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 PILRBQ9UKJ0 227 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 DOCK4Q8N1I0 1966 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 PCDH15Q96QU1 1955 aa14.96□□□□□ -0.01
HMGN3-201ENST00000275036 ASCC3Q8N3C0 2202 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 SYNJ2BP-COX16A0A087WUM0 186 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 C4orf47A7E2U8 309 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 KHNYNO15037 678 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 DAB1O75553 588 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 GFPT2O94808 682 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 MMEP08473 750 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 ADRB1P08588 477 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 PABPC1P11940 636 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 HLA-EP13747 358 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 POLR2FP61218 127 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 PTPRNQ16849 979 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 C2CD6Q53TS8 623 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 FKBP15Q5T1M5 1219 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 RAP1GAP2Q684P5 730 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 IL31Q6EBC2 164 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 KIAA1324Q6UXG2 1013 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 AOPEPQ8N6M6 819 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 ZNF366Q8N895 744 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 HJURPQ8NCD3 748 aaPredicted RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 TMEM35BQ8NCS4 154 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 WFIKKN2Q8TEU8 576 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 SLC20A1Q8WUM9 679 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 FAM204AQ9H8W3 233 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 NLRC4Q9NPP4 1024 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 DDIT4Q9NX09 232 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 COX16Q9P0S2 106 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 NOCTQ9UK39 431 aaKnown RBP14.95□□□□□ -0.02
HMGN3-201ENST00000275036 CACNA1EQ15878 2313 aa14.95□□□□□ -0.02
HMGN3-201ENST00000275036 LRRC10BA6NIK2 292 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 LGALS16A8MUM7 142 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 KCNU1A8MYU2 1149 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 NPC1O15118 1278 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 AP5Z1O43299 807 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 APOEP02649 317 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 ATP1A3P13637 1013 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 CHRNB2P17787 502 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 TFE3P19532 575 aaPredicted RBP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 TACR2P21452 398 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 GABRB2P47870 512 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 CDK17Q00537 523 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 LMAN2Q12907 356 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 BYSLQ13895 437 aaKnown RBP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 SYCP1Q15431 976 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 ANO6Q4KMQ2 910 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 TRIM61Q5EBN2 209 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 FSCBQ5H9T9 825 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 SPDYCQ5MJ68 293 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 MBLAC2Q68D91 279 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 MMS22LQ6ZRQ5 1243 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 CACUL1Q86Y37 369 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 XYLT1Q86Y38 959 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 SYT12Q8IV01 421 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 MFN1Q8IWA4 741 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 LGI2Q8N0V4 545 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 AHI1Q8N157 1196 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 ZNF397Q8NF99 534 aaPredicted RBP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 FIBINQ8TAL6 211 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 BTN2A3PQ96KV6 586 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 PRMT1Q99873 361 aaKnown RBP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 DDX50Q9BQ39 737 aaKnown RBP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 PDCL3Q9H2J4 239 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 TMEM245Q9H330 911 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 SYNCQ9H7C4 482 aa14.94□□□□□ -0.02
HMGN3-201ENST00000275036 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.94□□□□□ -0.02
HMGN3-201ENST00000275036 USP36Q9P275 1121 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms