RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ZBTB42B2RXF5 422 aa13□□□□□ -0.33
LIG1-201ENST00000263274 MAGEC1O60732 1142 aa13□□□□□ -0.33
LIG1-201ENST00000263274 GLRA3O75311 464 aa13□□□□□ -0.33
LIG1-201ENST00000263274 LYNP07948 512 aa13□□□□□ -0.33
LIG1-201ENST00000263274 CYP4V2Q6ZWL3 525 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 APOBEC3FQ8IUX4 373 aaKnown RBP13□□□□□ -0.33
LIG1-201ENST00000263274 OR52K1Q8NGK4 314 aa13□□□□□ -0.33
LIG1-201ENST00000263274 CSPG4P5Q96PW8 444 aa13□□□□□ -0.33
LIG1-201ENST00000263274 KCTD15Q96SI1 283 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 FRMD8Q9BZ67 464 aaPredicted RBP13□□□□□ -0.33
LIG1-201ENST00000263274 DTLQ9NZJ0 730 aa13□□□□□ -0.33
LIG1-201ENST00000263274 SIN3BO75182 1162 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 ITGA2BP08514 1039 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 MED21Q13503 144 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 TTLL4Q14679 1199 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 STILQ15468 1287 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 SOWAHAQ2M3V2 549 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 MMEL1Q495T6 779 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 HSP90AA5PQ58FG0 334 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 KDELC2Q7Z4H8 507 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 RIOX2Q8IUF8 465 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 EXOC8Q8IYI6 725 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 C12orf42Q96LP6 360 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 OXCT2Q9BYC2 517 aaPredicted RBP12.99□□□□□ -0.33
LIG1-201ENST00000263274 SNX25Q9H3E2 840 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 TUBGCP4Q9UGJ1 667 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 ZNF180Q9UJW8 692 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.99□□□□□ -0.33
LIG1-201ENST00000263274 GAS2O43903 313 aaKnown RBP12.99□□□□□ -0.33
LIG1-201ENST00000263274 KLHL2O95198 593 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 CPA3P15088 417 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 RPS12P25398 132 aaKnown RBP12.99□□□□□ -0.33
LIG1-201ENST00000263274 ATICP31939 592 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 L1CAMP32004 1257 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 AVPR1AP37288 418 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 ACTR3P61158 418 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 CDC16Q13042 620 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 LBRQ14739 615 aaKnown RBP12.99□□□□□ -0.33
LIG1-201ENST00000263274 OLFML1Q6UWY5 402 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 STRA8Q7Z7C7 330 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 DEFB106AQ8N104 65 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG1-201ENST00000263274 AFG1LQ8WV93 481 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 MED10Q9BTT4 135 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 ASB7Q9H672 318 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 PLAC1Q9HBJ0 212 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 LMCD1Q9NZU5 365 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 CEP350Q5VT06 3117 aa12.99□□□□□ -0.33
LIG1-201ENST00000263274 CAPN14A8MX76 684 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 ALDOAP04075 364 aaKnown RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 MX2P20592 715 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 ACAT1P24752 427 aaKnown RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 GARSP41250 739 aaKnown RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 SCNN1BP51168 640 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 WASHC5Q12768 1159 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 TEDDM1Q5T9Z0 273 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PHTF2Q8N3S3 785 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 USP33Q8TEY7 942 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 GCNAQ96QF7 691 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 GORASP1Q9BQQ3 440 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 CCDC106Q9BWC9 280 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PLA2G4CQ9UP65 541 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 FAM159BA6NKW6 160 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 KLF11O14901 512 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 MFSD11O43934 449 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PLIN3O60664 434 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PFKMP08237 780 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 MCF2P10911 925 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 RAG1P15918 1043 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 LMO2P25791 158 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 GABRB2P47870 512 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 SNX16P57768 344 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PITX1P78337 314 aaPredicted RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 TBL3Q12788 808 aaKnown RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 PIP4K2CQ8TBX8 421 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 SLC2A14Q8TDB8 520 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 GDPD5Q8WTR4 605 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 USP13Q92995 863 aaPredicted RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 FAM136AQ96C01 138 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 LRRC39Q96DD0 335 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 P2RY11Q96G91 374 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 MARK4Q96L34 752 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 ZNF670Q9BS34 389 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PRDM12Q9H4Q4 367 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 WDR55Q9H6Y2 383 aaPredicted RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 GOLGA2P5Q9HBQ8 144 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 TMEM165Q9HC07 324 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 INPP5FQ9Y2H2 1132 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 M0QYT0 321 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 SERPINE1P05121 402 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 POLBP06746 335 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 ENO3P13929 434 aaPredicted RBP12.98□□□□□ -0.33
LIG1-201ENST00000263274 VAV1P15498 845 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PROZP22891 400 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PEX2P28328 305 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 NUDT2P50583 147 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 MTA1Q13330 715 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 TEX44Q53QW1 395 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 GALNT15Q8N3T1 639 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 CCNYL1Q8N7R7 359 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms