RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SRRDQ9UH36 339 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 PCDHA11Q9Y5I1 949 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 DNM1LO00429 736 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 LPXNO60711 386 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 EOMESO95936 686 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 CKBP12277 381 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SCTRP47872 440 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 DNAJC3Q13217 504 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 TTC31Q49AM3 519 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 MAP3K21Q5TCX8 1036 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 LRRC8BQ6P9F7 803 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 C4orf50Q6ZRC1 276 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM47EQ6ZV65 393 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 NETO2Q8NC67 525 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 FBXO22Q8NEZ5 403 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 APBB2Q92870 758 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 STAMBPL1Q96FJ0 436 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 APOPT1Q96IL0 206 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 GLT1D1Q96MS3 346 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 KLF6Q99612 283 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 TKTL2Q9H0I9 626 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 KLHL14Q9P2G3 628 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 GRID1Q9ULK0 1009 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 PHTF1Q9UMS5 762 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 STARD13Q9Y3M8 1113 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 COL4A4P53420 1690 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 MOXD2PA6NHM9 499 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SDR42E2A6NKP2 422 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 F5H423 210 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 C1QAP02745 245 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 ITGB1P05556 798 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 GSTA1P08263 222 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SNRPAP09012 282 aaKnown RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 ALADP13716 330 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 GRIA1P42261 906 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 YWHAHQ04917 246 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SLC18A2Q05940 514 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 WASHC5Q12768 1159 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SPRED3Q2MJR0 410 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 BEND5Q7L4P6 421 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 TAC4Q86UU9 113 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 LRRTM3Q86VH5 581 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SPATA2LQ8IUW3 424 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 ZNF567Q8N184 647 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 MPP5Q8N3R9 675 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 GBP7Q8N8V2 638 aaPredicted RBP13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 RNF34Q969K3 372 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 SERAC1Q96JX3 654 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 TMEM209Q96SK2 561 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 BRD8Q9H0E9 1235 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 PLAC1Q9HBJ0 212 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 OR12D3Q9UGF7 316 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 PRKAG3Q9UGI9 489 aa13.31□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM159BA6NKW6 160 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CXorf49A8MYA2 514 aaPredicted RBP13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 TRIM49D1C9J1S8 452 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 I6L893 689 aaPredicted RBP13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 MTSS1O43312 755 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 AOC2O75106 756 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 KRT38O76015 456 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 MX2P20592 715 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 ADRA1DP25100 572 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 PSMB4P28070 264 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 SERPINB6P35237 376 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CGB2Q6NT52 195 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CASC4Q6P4E1 433 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CYS1Q717R9 158 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 SLC24A5Q71RS6 500 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 PID1Q7Z2X4 250 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CCNJLQ8IV13 435 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 URGCPQ8TCY9 931 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 ZNF75CPQ92670 426 aaPredicted RBP13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 MTBPQ96DY7 904 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 MS4A3Q96HJ5 214 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 CEP41Q9BYV8 373 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 VPS11Q9H270 941 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 ABCF3Q9NUQ8 709 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 HAUS2Q9NVX0 235 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 IGSF9Q9P2J2 1179 aa13.3□□□□□ -0.28
SPTLC1-201ENST00000262554 WDR27A2RRH5 827 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 EDF1O60869 148 aaKnown RBP13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM155BO75949 473 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 AMHP03971 560 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 CYP2C18P33260 490 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 GRIK1P39086 918 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 SERPINB9P50453 376 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 NEK3P51956 506 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 PPIDQ08752 370 aaKnown RBP13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 STEAP4Q687X5 459 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 RNF43Q68DV7 783 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 CCDC63Q8NA47 563 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 SCAMP5Q8TAC9 235 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 RAET1EQ8TD07 263 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 DQX1Q8TE96 717 aaKnown RBP13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 DEPDC1BQ8WUY9 529 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 TSEN34Q9BSV6 310 aaKnown RBP13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 NAT9Q9BTE0 207 aa13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 IQCGQ9H095 443 aaKnown RBP13.29□□□□□ -0.28
SPTLC1-201ENST00000262554 TRPV6Q9H1D0 765 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms