RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RNASEH2AO75792 299 aaKnown RBP14.75□□□□□ -0.05
SDC1-201ENST00000254351 SPDYE6P0CI01 402 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 RALGDSQ12967 914 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 CEACAM7Q14002 265 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 TMEM132AQ24JP5 1023 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 SPDYE2Q495Y8 402 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 PPP1R2P3Q6NXS1 205 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 HHIPL2Q6UWX4 724 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 UTS2BQ765I0 119 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 PATL1Q86TB9 770 aaKnown RBP14.75□□□□□ -0.05
SDC1-201ENST00000254351 SP8Q8IXZ3 490 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 NUP93Q8N1F7 819 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 PLD6Q8N2A8 252 aaKnown RBP14.75□□□□□ -0.05
SDC1-201ENST00000254351 KCTD17Q8N5Z5 321 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 FNDC8Q8TC99 324 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 CHURC1Q8WUH1 139 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 SLC4A5Q9BY07 1137 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 KLC2Q9H0B6 622 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 COQ10BQ9H8M1 238 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 TXNDC16Q9P2K2 825 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 CDC14AQ9UNH5 594 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 GMEB1Q9Y692 573 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 C7orf72A4D263 438 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 J3QRK9 145 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ZC3H11AO75152 810 aaKnown RBP eCLIP14.75□□□□□ -0.05
SDC1-201ENST00000254351 MT-CO1P00395 513 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 CKMT2P17540 419 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 PHKA2P46019 1235 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 NR1H2P55055 460 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ART3Q13508 389 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 STYK1Q6J9G0 422 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 PQLC3Q8N755 202 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 DEPTORQ8TB45 409 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 FBXL8Q96CD0 374 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ZFRQ96KR1 1074 aaKnown RBP14.75□□□□□ -0.05
SDC1-201ENST00000254351 HMGXB4Q9UGU5 601 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 USP12O75317 370 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 HDCP19113 662 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 MPSTP25325 297 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ADGRE1Q14246 886 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 MTX3Q5HYI7 312 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ARHGEF16Q5VV41 709 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 POTEHQ6S545 545 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 KCNT2Q6UVM3 1135 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 CHST15Q7LFX5 561 aaPredicted RBP14.75□□□□□ -0.05
SDC1-201ENST00000254351 C4orf19Q8IY42 314 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 SPATA6LQ8N4H0 392 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 LRTOMTQ8WZ04 291 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 ADPGKQ9BRR6 497 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 XPNPEP3Q9NQH7 507 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 DENRO43583 198 aaKnown RBP14.74□□□□□ -0.05
SDC1-201ENST00000254351 PLIN3O60664 434 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 DPP6P42658 865 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 ABCE1P61221 599 aaKnown RBP14.74□□□□□ -0.05
SDC1-201ENST00000254351 IRF9Q00978 393 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 CA9Q16790 459 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 BNC2Q6ZN30 1099 aaPredicted RBP14.74□□□□□ -0.05
SDC1-201ENST00000254351 FAM110BQ8TC76 370 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 ATP2A3Q93084 1043 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 TIMMDC1Q9NPL8 285 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 ENTPD3O75355 529 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 SERPINE1P05121 402 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 OR6B2Q6IFH4 312 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 MFHAS1Q9Y4C4 1052 aa14.74□□□□□ -0.05
SDC1-201ENST00000254351 TCRBV5S1A1TA0A578 114 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 LTFP02788 710 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 JUNP05412 331 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 PDGFRAP16234 1089 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 PIK3R1P27986 724 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 ATXN1P54253 815 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 SFSWAPQ12872 951 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 PITRM1Q5JRX3 1037 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 CCDC60Q8IWA6 550 aaPredicted RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 ZNF786Q8N393 782 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 SMYD1Q8NB12 490 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 KYQ8NBH2 561 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 ZDHHC15Q96MV8 337 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 AGAP3Q96P47 875 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 ST6GALNAC4Q9H4F1 302 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 TCF7L2Q9NQB0 619 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 RNF11Q9Y3C5 154 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 TFE3P19532 575 aaPredicted RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 TBXAS1P24557 533 aaPredicted RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 L1CAMP32004 1257 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 KPNA1P52294 538 aaPredicted RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 PRKCEQ02156 737 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 GBE1Q04446 702 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 TDRD5Q8NAT2 981 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 PPP1R16BQ96T49 567 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 SLC29A1Q99808 456 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 NOL11Q9H8H0 719 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 GMPR2Q9P2T1 348 aaKnown RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 CTDP1Q9Y5B0 961 aaPredicted RBP14.73□□□□□ -0.05
SDC1-201ENST00000254351 LTBP1Q14766 1721 aa14.73□□□□□ -0.05
SDC1-201ENST00000254351 SYNJ2BP-COX16A0A087WUM0 186 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 FAM149AA5PLN7 773 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 M0QYV0 167 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PRPSAP2O60256 369 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 ZBTB7AO95365 584 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 TRUB2O95900 331 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms