RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 GAS2O43903 313 aaKnown RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 HBP1O60381 514 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 MAP3K6O95382 1288 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 COX4I1P13073 169 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 GTF2H1P32780 548 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 FLT3P36888 993 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 PRKCEQ02156 737 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 RALGDSQ12967 914 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 ITGA7Q13683 1181 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 UNC45BQ8IWX7 931 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 SLC20A1Q8WUM9 679 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 PPP1R10Q96QC0 940 aaKnown RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 DENND2DQ9H6A0 471 aaPredicted RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 PCDH9Q9HC56 1237 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 NDUFAF1Q9Y375 327 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 EEF2KO00418 725 aaKnown RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 DYNC1LI2O43237 492 aaPredicted RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 HIST1H2AGP0C0S8 130 aaPredicted RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 HIST1H2ADP20671 130 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 SLC26A3P40879 764 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 FXR2P51116 673 aaKnown RBP eCLIP10.68□□□□□ -0.71e-7■■■■□ 19.6
VCL-201ENST00000211998 ITGA1P56199 1179 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 PCSK7Q16549 785 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 CACHD1Q5VU97 1274 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 VPS37AQ8NEZ2 397 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 HIST1H2AHQ96KK5 128 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 TSPAN18Q96SJ8 248 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 HIST1H2AJQ99878 128 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 H2AFJQ9BTM1 129 aa10.68□□□□□ -0.7
VCL-201ENST00000211998 MOV10Q9HCE1 1003 aaKnown RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 FBXO6Q9NRD1 293 aaPredicted RBP10.68□□□□□ -0.7
VCL-201ENST00000211998 SPATA31A1Q5TZJ5 1347 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 NTSR2O95665 410 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 HLA-DRAP01903 254 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 CETPP11597 493 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 GZMAP12544 262 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 LDLRAP1Q5SW96 308 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 SDE2Q6IQ49 451 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FBXO33Q7Z6M2 555 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ALYREFQ86V81 257 aaKnown RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 SCFD2Q8WU76 684 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TFB1MQ8WVM0 346 aaKnown RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 FAR1Q8WVX9 515 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FOPNLQ96NB1 174 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TMEM106CQ9BVX2 250 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 NT5C1AQ9BXI3 368 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TRPV5Q9NQA5 729 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ETNK2Q9NVF9 386 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ZSCAN32Q9NX65 697 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ING3Q9NXR8 418 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ERAP1Q9NZ08 941 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TFECO14948 347 aaPredicted RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 EXTL3O43909 919 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 SOAT2O75908 522 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 RPA1P27694 616 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TYSND1Q2T9J0 566 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ATF7IP2Q5U623 682 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FITM2Q8N6M3 262 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 LRRC17Q8N6Y2 441 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 GPAMQ9HCL2 828 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 STOML2Q9UJZ1 356 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PCDHGC5Q9Y5F6 944 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ETFBP38117 255 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PNPLA4P41247 253 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 GRIA3P42263 894 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 TPTEP56180 551 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 COPZ1P61923 177 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ZNF268Q14587 947 aaPredicted RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 PAGE2BQ5JRK9 111 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 NECAB2Q7Z6G3 386 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 LRRC71Q8N4P6 559 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FAM47BQ8NA70 645 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 WDR36Q8NI36 951 aaKnown RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 DQX1Q8TE96 717 aaKnown RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 GPRASP2Q96D09 838 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 C17orf75Q9HAS0 396 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 KBTBD4Q9NVX7 518 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 LIMD1Q9UGP4 676 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 A0A1W2PQ72 361 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 MTSS1O43312 755 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 SNAP91O60641 907 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PROSCO94903 275 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 C6orf222P0C671 652 aaPredicted RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 PRIM2P49643 509 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 SLC5A3P53794 718 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 HIRAP54198 1017 aaPredicted RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 TIMM50Q3ZCQ8 353 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 SYTL3Q4VX76 610 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 NAPEPLDQ6IQ20 393 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FAM180AQ6UWF9 173 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PAGE2Q7Z2X7 111 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 FAM228AQ86W67 206 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 DENND6AQ8IWF6 608 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PQLC1Q8N2U9 271 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 PARP8Q8N3A8 854 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 ZCCHC9Q8N567 271 aaKnown RBP10.67□□□□□ -0.7
VCL-201ENST00000211998 TAMM41Q96BW9 452 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 UGT2B28Q9BY64 529 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 UBXN6Q9BZV1 441 aa10.67□□□□□ -0.7
VCL-201ENST00000211998 CATSPERBQ9H7T0 1116 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms