RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TTKP33981 857 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC26A3P40879 764 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CHRNDQ07001 517 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RASGEF1BQ0VAM2 473 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC29A2Q14542 456 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DCST1Q5T197 706 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CYP20A1Q6UW02 462 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CYP4Z1Q86W10 505 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PNLDC1Q8NA58 520 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 USP38Q8NB14 1042 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SUN5Q8TC36 379 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 S100PBPQ96BU1 408 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CYFIP2Q96F07 1278 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CEP170P1Q96L14 293 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KMT5AQ9NQR1 393 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM207AQ9NSI2 230 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TUBGCP4Q9UGJ1 667 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KIF24Q5T7B8 1368 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEA13PA6NCF6 341 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM66O15016 1216 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DNTTP04053 509 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GAP43P17677 238 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 OGNP20774 298 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MCAMP43121 646 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEA6P43360 314 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MZT1Q08AG7 82 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MSLNQ13421 630 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PITRM1Q5JRX3 1037 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SPANXN2Q5MJ10 180 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM63BQ5T3F8 832 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PCNX4Q63HM2 1172 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CHRDL2Q6WN34 429 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZYG11AQ6WRX3 759 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC20Q8TCA0 184 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EXT2Q93063 718 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM162AQ96A26 154 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC126Q96EE4 140 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 QRFPRQ96P65 431 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HIST1H2AAQ96QV6 131 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PIGSQ96S52 555 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GPR63Q9BZJ6 419 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SMIM31A0A1B0GVY4 71 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C21orf2O43822 256 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TLL1O43897 1013 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 IFNA14P01570 189 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAP2K4P45985 399 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KCNC1P48547 511 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARF5P84085 180 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EPS8Q12929 822 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C1DQ13901 141 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAD2L1BPQ15013 274 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FASTKD1Q53R41 847 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PPM1LQ5SGD2 360 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KIAA0408Q6ZU52 694 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 STRA8Q7Z7C7 330 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GPIHBP1Q8IV16 184 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 REXO1Q8N1G1 1221 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C1orf131Q8NDD1 294 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GPT2Q8TD30 523 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NSUN6Q8TEA1 469 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PTCD2Q8WV60 388 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CENPTQ96BT3 561 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MYO19Q96H55 970 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM68Q96MH6 324 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TEX13BQ9BXU2 312 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ASNSD1Q9NWL6 643 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HAO2Q9NYQ3 351 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GTSE1Q9NYZ3 720 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 COQ6Q9Y2Z9 468 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SH3GLB1Q9Y371 365 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ABCB11O95342 1321 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 IGF2BP3O00425 579 aaKnown RBP eCLIP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 LRCH4O75427 683 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RBMXL2O75526 392 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PALMO75781 387 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TGM2P21980 687 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GCSHP23434 173 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FLT3P36888 993 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ATP12AP54707 1039 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ABATP80404 500 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 KCNMA1Q12791 1236 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PPP1R15BQ5SWA1 713 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RETSATQ6NUM9 610 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RWDD4Q6NW29 188 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 LPAR1Q92633 364 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PTPRN2Q92932 1015 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PNPLA2Q96AD5 504 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SLC52A2Q9HAB3 445 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CYP26B1Q9NR63 512 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 C19orf25Q9UFG5 118 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 AOX1Q06278 1338 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GLUD1P00367 558 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CKMP06732 381 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 JMJD7P0C870 316 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OR12D1P0DN82 309 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 H2AFXP16104 143 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 VHLP40337 213 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 STARP49675 285 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 UGP2Q16851 508 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms