RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NADSYN1Q6IA69 706 aa20■□□□□ 0.79
CLN3-260ENST00000637578 TAC4Q86UU9 113 aa20■□□□□ 0.79
CLN3-260ENST00000637578 DDX51Q8N8A6 666 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-260ENST00000637578 C1orf131Q8NDD1 294 aaKnown RBP20■□□□□ 0.79
CLN3-260ENST00000637578 DDX1Q92499 740 aaKnown RBP20■□□□□ 0.79
CLN3-260ENST00000637578 NOX5Q96PH1 765 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SLC2A13Q96QE2 648 aa20■□□□□ 0.79
CLN3-260ENST00000637578 GANQ9H2C0 597 aa20■□□□□ 0.79
CLN3-260ENST00000637578 ELOVL2Q9NXB9 296 aa20■□□□□ 0.79
CLN3-260ENST00000637578 INVSQ9Y283 1065 aa20■□□□□ 0.79
CLN3-260ENST00000637578 SIK3Q9Y2K2 1263 aa20■□□□□ 0.79
CLN3-260ENST00000637578 GOLGA6L7A0A1B0GV03 622 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 CAPN9O14815 690 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 FOXD2O60548 495 aaPredicted RBP19.99■□□□□ 0.79
CLN3-260ENST00000637578 HLA-FP30511 346 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 SYCP1Q15431 976 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 ELF2Q15723 593 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 EFHC1Q5JVL4 640 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 PMS2CLQ68D20 193 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 KIAA1211LQ6NV74 962 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 RFWD3Q6PCD5 774 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 OLFML1Q6UWY5 402 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 ADAM32Q8TC27 787 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 IPO4Q8TEX9 1081 aaKnown RBP19.99■□□□□ 0.79
CLN3-260ENST00000637578 ERGIC2Q96RQ1 377 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 ARRDC1-AS1Q9H2J1 176 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 CACNA2D2Q9NY47 1150 aa19.99■□□□□ 0.79
CLN3-260ENST00000637578 WASH3PC4AMC7 463 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 F8VZ95 297 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 TRUB2O95900 331 aaKnown RBP19.98■□□□□ 0.79
CLN3-260ENST00000637578 ERBB2P04626 1255 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 ZNF806P0C7X5 589 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 BCKDHBP21953 392 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 SNX16P57768 344 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 E2F5Q15329 346 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 PTPN20Q4JDL3 420 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 PRR23CQ6ZRP0 262 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 UCMAQ8WVF2 138 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 DDX50Q9BQ39 737 aaKnown RBP19.98■□□□□ 0.79
CLN3-260ENST00000637578 BCCIPQ9P287 314 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-260ENST00000637578 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.98■□□□□ 0.79
CLN3-260ENST00000637578 STON1Q9Y6Q2 735 aa19.98■□□□□ 0.79
CLN3-260ENST00000637578 HSF2BPO75031 334 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 UBASH3AP57075 661 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 PITX1P78337 314 aaPredicted RBP19.97■□□□□ 0.79
CLN3-260ENST00000637578 RSPO4Q2I0M5 234 aaPredicted RBP19.97■□□□□ 0.79
CLN3-260ENST00000637578 FAM183BPQ6ZVS7 135 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 ZNF397Q8NF99 534 aaPredicted RBP19.97■□□□□ 0.79
CLN3-260ENST00000637578 RLN3Q8WXF3 142 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 LMLNQ96KR4 655 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 FAM207AQ9NSI2 230 aaPredicted RBP19.97■□□□□ 0.79
CLN3-260ENST00000637578 MBD1Q9UIS9 605 aaPredicted RBP19.97■□□□□ 0.79
CLN3-260ENST00000637578 DAAM1Q9Y4D1 1078 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 ABCA7Q8IZY2 2146 aa19.97■□□□□ 0.79
CLN3-260ENST00000637578 SDHBP21912 280 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 GBP1P32455 592 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 IL12RB1P42701 662 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 GABRB2P47870 512 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 SLC6A3Q01959 620 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 BYSLQ13895 437 aaKnown RBP19.96■□□□□ 0.79
CLN3-260ENST00000637578 PUM1Q14671 1186 aaKnown RBP eCLIP19.96■□□□□ 0.79
CLN3-260ENST00000637578 NR1I3Q14994 352 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 DCAF6Q58WW2 860 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 SLC26A9Q7LBE3 791 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 ADIPOR2Q86V24 386 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 ZDHHC17Q8IUH5 632 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 DEFB106AQ8N104 65 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 FRMD1Q8N878 549 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 TMEM35BQ8NCS4 154 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 WFIKKN2Q8TEU8 576 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 MYEOVQ96EZ4 313 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 PRICKLE1Q96MT3 831 aaPredicted RBP19.96■□□□□ 0.79
CLN3-260ENST00000637578 IFNKQ9P0W0 207 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 CEP83Q9Y592 693 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 RAD54BQ9Y620 910 aa19.96■□□□□ 0.79
CLN3-260ENST00000637578 BCLAF3A2AJT9 711 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 KCNU1A8MYU2 1149 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 EPHB6O15197 1021 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 TBL1XO60907 577 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 NDUFV2P19404 249 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 MPLP40238 635 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 JAM2P57087 298 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 ZC3H12AQ5D1E8 599 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 MS4A13Q5J8X5 152 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 SPDYCQ5MJ68 293 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 NOP9Q86U38 636 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 PGBD3Q8N328 593 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 FIBINQ8TAL6 211 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 WFDC5Q8TCV5 224 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 EPS8L1Q8TE68 723 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 BTN2A3PQ96KV6 586 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 SPACA7Q96KW9 195 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 MRGPRX1Q96LB2 322 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 PCMTD1Q96MG8 357 aaPredicted RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 NUCKS1Q9H1E3 243 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 ABCB8Q9NUT2 735 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-260ENST00000637578 CALCOCO1Q9P1Z2 691 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 XPO7Q9UIA9 1087 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 GGA2Q9UJY4 613 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms