RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ZC3H11AO75152 810 aaKnown RBP eCLIP3.15□□□□□ -1.91
VIM-210ENST00000637053 NIPSNAP2O75323 286 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TACC1O75410 805 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ZNF205O95201 554 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CHRNA1P02708 482 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CYBBP04839 570 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ITGAVP06756 1048 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ANXA6P08133 673 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ABCB1P08183 1280 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 CYP3A4P08684 503 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 HMOX1P09601 288 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ATP2A2P16615 1042 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 ATP5JP18859 108 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PRKACBP22694 351 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ACAT1P24752 427 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 CTNNA2P26232 953 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ARL3P36405 182 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PPARGP37231 505 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 MAGEA4P43358 317 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 AMPHP49418 695 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ARHGDIBP52566 201 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ZNF143P52747 638 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 SEC24CP53992 1094 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 NOP14P78316 857 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 RNASELQ05823 741 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 CHRNDQ07001 517 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ELP6Q0PNE2 266 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TRAP1Q12931 704 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 GPS2Q13227 327 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 KCNAB2Q13303 367 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 MPP3Q13368 585 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PLD1Q13393 1074 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 MAMLD1Q13495 774 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 SLC12A1Q13621 1099 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 DAG1Q14118 895 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 RBBP5Q15291 538 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 SEC23AQ15436 765 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PGS1Q32NB8 556 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 FBXO43Q4G163 708 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TCP11X2Q5H9J9 407 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 NBPF12Q5TAG4 269 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 CAVIN1Q6NZI2 390 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 TRAT1Q6PIZ9 186 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PET117Q6UWS5 81 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ARHGAP36Q6ZRI8 547 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CACNA2D4Q7Z3S7 1137 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 UBE3BQ7Z3V4 1068 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PXKQ7Z7A4 578 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 MON1AQ86VX9 555 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 OSTM1Q86WC4 334 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ZNF227Q86WZ6 799 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 MICU3Q86XE3 530 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ERO1BQ86YB8 467 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 RFX6Q8HWS3 928 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PSTKQ8IV42 348 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 WDR63Q8IWG1 891 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 MCEMP1Q8IX19 187 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TUSC5Q8IXB3 177 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PALM2Q8IXS6 379 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 PHACTR4Q8IZ21 702 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CELF5Q8N6W0 485 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 MRPL43Q8N983 215 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 GANCQ8TET4 914 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 LMBR1Q8WVP7 490 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TBC1D5Q92609 795 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 SYN2Q92777 582 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 PTPRN2Q92932 1015 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ZNF566Q969W8 418 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 FAM162AQ96A26 154 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 RAB7BQ96AH8 199 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TMIGD2Q96BF3 282 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 SPACA9Q96E40 222 aaPredicted RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 CYFIP2Q96F07 1278 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 EDC3Q96F86 508 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 SUCLG2Q96I99 432 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CDK5RAP1Q96SZ6 601 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 HEPHQ9BQS7 1158 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ERP44Q9BS26 406 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 KIFC3Q9BVG8 833 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 COLEC11Q9BWP8 271 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CDADC1Q9BWV3 514 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 LGR4Q9BXB1 951 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 GPR63Q9BZJ6 419 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TRIM2Q9C040 744 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ANKRD2Q9GZV1 360 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 KLC2Q9H0B6 622 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 ABCG8Q9H221 673 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 CARD9Q9H257 536 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 DCTPP1Q9H773 170 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 C17orf75Q9HAS0 396 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 SARS2Q9NP81 518 aaKnown RBP3.15□□□□□ -1.91
VIM-210ENST00000637053 SDHAF3Q9NRP4 125 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 FKBP14Q9NWM8 211 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.15□□□□□ -1.91
VIM-210ENST00000637053 MOCS1Q9NZB8 636 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 EHD3Q9NZN3 535 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 TRPM5Q9NZQ8 1165 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 EMC3Q9P0I2 261 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 NTMQ9P121 344 aa3.15□□□□□ -1.91
VIM-210ENST00000637053 WHRNQ9P202 907 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms