RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PLA2G4CQ9UP65 541 aa16.84■□□□□ 0.29
CLN3-246ENST00000636228 TMEM8BA6NDV4 472 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 BCAT2O15382 392 aaPredicted RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 TBL1XO60907 577 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 IGLV3-19P01714 112 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 ACSL1P33121 698 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 RDXP35241 583 aaKnown RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 CSNK1EP49674 416 aaKnown RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 YWHAEP62258 255 aaKnown RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 AKAP13Q12802 2813 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 PTPRNQ16849 979 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 LCLAT1Q6UWP7 414 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 RAB44Q7Z6P3 723 aaPredicted RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 ENGASEQ8NFI3 743 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 SETD7Q8WTS6 366 aaKnown RBP16.83■□□□□ 0.28
CLN3-246ENST00000636228 SMARCE1Q969G3 411 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 GSDMAQ96QA5 445 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 LHX5Q9H2C1 402 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 TMEM245Q9H330 911 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 STIM2Q9P246 746 aa16.83■□□□□ 0.28
CLN3-246ENST00000636228 CHD6Q8TD26 2715 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 A0A1B0GVT2 93 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 GOLGA6L4A6NEF3 574 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 H0Y626 953 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 SMC2O95347 1197 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 TRIM16O95361 564 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 FTH1P19P0C7X4 201 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 SETSIPP0DME0 302 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 PABPC1P11940 636 aaKnown RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 CD44P16070 742 aaKnown RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 TBXAS1P24557 533 aaPredicted RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 BRD2P25440 801 aaKnown RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 SLC6A4P31645 630 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 CD70P32970 193 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 FMO5P49326 533 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 CAMK2GQ13555 558 aaPredicted RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 HLA-BQ31612 363 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 COBLL1Q53SF7 1204 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 MBLAC2Q68D91 279 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 RRAGAQ7L523 313 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 SLCO6A1Q86UG4 719 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 SLC35F5Q8WV83 523 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 MYEOVQ96EZ4 313 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 ZDHHC5Q9C0B5 715 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 MIS12Q9H081 205 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 PRSS16Q9NQE7 514 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 CNGB3Q9NQW8 809 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 KIAA1257Q9ULG3 409 aa16.82■□□□□ 0.28
CLN3-246ENST00000636228 FNDC3AQ9Y2H6 1198 aaKnown RBP16.82■□□□□ 0.28
CLN3-246ENST00000636228 CACNA1EQ15878 2313 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 M0QYV0 167 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 TAF4O00268 1085 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 KCNK3O14649 394 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 HNRNPDQ14103 355 aaKnown RBP16.81■□□□□ 0.28
CLN3-246ENST00000636228 ZNF423Q2M1K9 1284 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 FAM133BQ5BKY9 247 aaKnown RBP16.81■□□□□ 0.28
CLN3-246ENST00000636228 PIK3R6Q5UE93 754 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 KIAA0907Q7Z7F0 614 aaPredicted RBP16.81■□□□□ 0.28
CLN3-246ENST00000636228 PPM1KQ8N3J5 372 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 C1orf216Q8TAB5 229 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 SPATA20Q8TB22 786 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 WFIKKN2Q8TEU8 576 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 TM7SF3Q9NS93 570 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 PCOLCE2Q9UKZ9 415 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-246ENST00000636228 NFE2L3Q9Y4A8 694 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 WDFY3Q8IZQ1 3526 aa16.81■□□□□ 0.28
CLN3-246ENST00000636228 CEP192Q8TEP8 1941 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 FAM221BA6H8Z2 402 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 ACSL4O60488 711 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 CBFA2T3O75081 653 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 LATS1O95835 1130 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 LTFP02788 710 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 PAEPP09466 180 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 MATKP42679 507 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 TBX4P57082 545 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 RPS14P62263 151 aaKnown RBP16.8■□□□□ 0.28
CLN3-246ENST00000636228 LRRC63Q05C16 580 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 E2F5Q15329 346 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 CNGA2Q16280 664 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 CCDC40Q4G0X9 1142 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 NADSYN1Q6IA69 706 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 KLHL10Q6JEL2 608 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 MSANTD2Q6P1R3 559 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 LAYNQ6UX15 382 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 ARHGEF19Q8IW93 802 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 AHI1Q8N157 1196 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 SCML4Q8N228 414 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLN3-246ENST00000636228 LMO3Q8TAP4 145 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 NT5C1BQ96P26 610 aa16.8■□□□□ 0.28
CLN3-246ENST00000636228 PI4KAP42356 2102 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 IGF2RP11717 2491 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 GOLGA8CPA6NN73 597 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 FSBPO95073 299 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 IGLV3-27P01718 113 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 FYNP06241 537 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 DLDP09622 509 aaKnown RBP16.79■□□□□ 0.28
CLN3-246ENST00000636228 HOXB3P14651 431 aaPredicted RBP16.79■□□□□ 0.28
CLN3-246ENST00000636228 POLR2EP19388 210 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms