RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UTS2BQ765I0 119 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 ACOT1Q86TX2 421 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 PDSS2Q86YH6 399 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 DDIASQ8IXT1 998 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 TFB1MQ8WVM0 346 aaKnown RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 NPAS2Q99743 824 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 KANSL3Q9P2N6 904 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 AMHP03971 560 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 OCM2P0CE71 109 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 OCMP0CE72 109 aaPredicted RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 GMPRP36959 345 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 PLK1P53350 603 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 NUP107P57740 925 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 ADRM1Q16186 407 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 GOLGA7BQ2TAP0 167 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 TEDDM1Q5T9Z0 273 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 SH3BP5LQ7L8J4 393 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 ARCQ7LC44 396 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 EXOC8Q8IYI6 725 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 FAM136AQ96C01 138 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 RNF157Q96PX1 679 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CIB1Q99828 191 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CCDC68Q9H2F9 335 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 OCEL1Q9H607 264 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CHST12Q9NRB3 414 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 DMTF1Q9Y222 760 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 NUP188Q5SRE5 1749 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 TIAM2Q8IVF5 1701 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 C4BPAP04003 597 aaKnown RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 CRABP2P29373 138 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 PTGER2P43116 358 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 PSMD7P51665 324 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 SETD3Q86TU7 594 aaPredicted RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 SPATA6LQ8N4H0 392 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 HPDLQ96IR7 371 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 MAML3Q96JK9 1138 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CCDC28BQ9BUN5 200 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 MRPS26Q9BYN8 205 aaKnown RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 ZNF70Q9UC06 446 aaPredicted RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 ANKRD12Q6UB98 2062 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 STX16-NPEPL1H3BU86 382 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MAGEB3O15480 346 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 CRTAMO95727 393 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 TRUB2O95900 331 aaKnown RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZFXP17010 805 aaPredicted RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 PIK3R1P27986 724 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 CAP2P40123 477 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 GP5P40197 560 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 PHKA2P46019 1235 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 EIF2B2P49770 351 aaKnown RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 HMGCS2P54868 508 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 C21orf59P57076 290 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 JAG1P78504 1218 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 CBX3Q13185 183 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 LSAMPQ13449 338 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 SIAH1Q8IUQ4 282 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 KIF12Q96FN5 646 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 RNF19AQ9NV58 838 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 TMEM216Q9P0N5 145 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 C6orf203Q9P0P8 240 aaPredicted RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 AP4S1Q9Y587 144 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 GRIN3BO60391 1043 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MICAL2O94851 1124 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 OATP04181 439 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 IDH3AP50213 366 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 PLIN5Q00G26 463 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 TRAF2Q12933 501 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 FOXD4Q12950 439 aaPredicted RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 DCAF6Q58WW2 860 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ATF7IP2Q5U623 682 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 PRAMEF18Q5VWM3 479 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 FOXB2Q5VYV0 432 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 DRICH1Q6PGQ1 229 aaPredicted RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 PAOXQ6QHF9 649 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZNF554Q86TJ5 538 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 AMIGO3Q86WK7 504 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 NIM1KQ8IY84 436 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MPP5Q8N3R9 675 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 SNX31Q8N9S9 440 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 FAM47BQ8NA70 645 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 OR6P1Q8NGX9 317 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 WNK4Q96J92 1243 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 OMDQ99983 421 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 SIK2Q9H0K1 926 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 TLE6Q9H808 572 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MRPL40Q9NQ50 206 aaKnown RBP11.31□□□□□ -0.6
CLN3-244ENST00000636147 PXMP2Q9NR77 195 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 GGA3Q9NZ52 723 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 PKD2L2Q9NZM6 624 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZNF229Q9UJW7 825 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZNF839A8K0R7 811 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MPSTP25325 297 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 CRHR1P34998 444 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 NAMPTP43490 491 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 GABRB2P47870 512 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 EFNA5P52803 228 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 CDH15P55291 814 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 MPP3Q13368 585 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 GPR107Q5VW38 600 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZFP1Q6P2D0 407 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms