RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SLC8A2Q9UPR5 921 aa21.48■■□□□ 1.03
CLN3-240ENST00000631023 TRIM24O15164 1050 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 TPM1P09493 284 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 GZMAP12544 262 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 SLC6A4P31645 630 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 DEUP1Q05D60 604 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 TDRD12Q587J7 1177 aaKnown RBP21.47■■□□□ 1.03
CLN3-240ENST00000631023 PHLDB2Q86SQ0 1253 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 ZNF557Q8N988 423 aaPredicted RBP21.47■■□□□ 1.03
CLN3-240ENST00000631023 HJURPQ8NCD3 748 aaPredicted RBP21.47■■□□□ 1.03
CLN3-240ENST00000631023 C3orf20Q8ND61 904 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 WDCPQ9H6R7 721 aa21.47■■□□□ 1.03
CLN3-240ENST00000631023 SERPING1P05155 500 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 HOXD9P28356 352 aaPredicted RBP21.46■■□□□ 1.03
CLN3-240ENST00000631023 CASP14P31944 242 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 MS4A13Q5J8X5 152 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 BRMS1LQ5PSV4 323 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 PKN3Q6P5Z2 889 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 ZC3H14Q6PJT7 736 aaKnown RBP21.46■■□□□ 1.03
CLN3-240ENST00000631023 TSSK4Q6SA08 328 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 SYT13Q7L8C5 426 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 SFTPA1Q8IWL2 248 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 MCOLN2Q8IZK6 566 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 P2RY11Q96G91 374 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 PIGVQ9NUD9 493 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 STARD13Q9Y3M8 1113 aa21.46■■□□□ 1.03
CLN3-240ENST00000631023 ANKRD62A6NC57 917 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 SIGLEC16A6NMB1 481 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TMCO5BA8MYB1 307 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TBL1XO60907 577 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 PDGFRAP16234 1089 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 SDC4P31431 198 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TIE1P35590 1138 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 KIR2DL1P43626 348 aaPredicted RBP21.45■■□□□ 1.02
CLN3-240ENST00000631023 CXCR3P49682 368 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 E2F5Q15329 346 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 DNAJC24Q6P3W2 148 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 SARM1Q6SZW1 724 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TRMT11Q7Z4G4 463 aaKnown RBP21.45■■□□□ 1.02
CLN3-240ENST00000631023 CHSY1Q86X52 802 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 VSTM4Q8IW00 320 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 CCDC117Q8IWD4 279 aaPredicted RBP21.45■■□□□ 1.02
CLN3-240ENST00000631023 EMC1Q8N766 993 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 CFAP57Q96MR6 1250 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TBCBQ99426 244 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 ANP32EQ9BTT0 268 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 TRIM5Q9C035 493 aa21.45■■□□□ 1.02
CLN3-240ENST00000631023 F5H5T6 163 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 TFE3P19532 575 aaPredicted RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 TACR2P21452 398 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 TSR1Q2NL82 804 aaKnown RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 EMC10Q5UCC4 262 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 RAP1GAP2Q684P5 730 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ANKS1BQ7Z6G8 1248 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 LGI2Q8N0V4 545 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ZNF513Q8N8E2 541 aaPredicted RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 UCMAQ8WVF2 138 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 RXFP2Q8WXD0 754 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ATRIPQ8WXE1 791 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 FAM122AQ96E09 287 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.44■■□□□ 1.02
CLN3-240ENST00000631023 ZSCAN32Q9NX65 697 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 TAS2R14Q9NYV8 317 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 CALCOCO1Q9P1Z2 691 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 STIM2Q9P246 746 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 XPO7Q9UIA9 1087 aaKnown RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 DOCK4Q8N1I0 1966 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 C2CD4BA6NLJ0 364 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 DDX3XO00571 662 aaKnown RBP eCLIP21.44■■□□□ 1.023e-8■■■□□ 15.1
CLN3-240ENST00000631023 RTN2O75298 545 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 HOXA6P31267 233 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 RDXP35241 583 aaKnown RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 DMC1Q14565 340 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 EOGTQ5NDL2 527 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ACBD5Q5T8D3 534 aaPredicted RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 OTUD1Q5VV17 481 aaPredicted RBP21.44■■□□□ 1.02
CLN3-240ENST00000631023 HGSNATQ68CP4 663 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 TRNP1Q6NT89 227 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 CCDC33Q8N5R6 958 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 CAMKK1Q8N5S9 505 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ALLCQ8N6M5 410 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 IL17RCQ8NAC3 791 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 TKTL2Q9H0I9 626 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 FAM86C1Q9NVL1 165 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 C2orf42Q9NWW7 574 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 ARHGEF38Q9NXL2 777 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 CLEC4EQ9ULY5 219 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 MMP17Q9ULZ9 603 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 PCDHGA2Q9Y5H1 932 aa21.44■■□□□ 1.02
CLN3-240ENST00000631023 SPAG17Q6Q759 2223 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 PRRT4C9JH25 899 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 K7ESF4 209 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 TIMM44O43615 452 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 PAGE1O75459 146 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 KLF8O95600 359 aaPredicted RBP21.43■■□□□ 1.02
CLN3-240ENST00000631023 FTLP02792 175 aaPredicted RBP21.43■■□□□ 1.02
CLN3-240ENST00000631023 RFC1P35251 1148 aaPredicted RBP21.43■■□□□ 1.02
CLN3-240ENST00000631023 PTPN9P43378 593 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 SGSHP51688 502 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 RPS24P62847 133 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms