RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 LMO2P25791 158 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PPM1LQ5SGD2 360 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 LGSNQ5TDP6 509 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ZNF662Q6ZS27 426 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ATPAF2Q8N5M1 289 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 C1orf127Q8N9H9 656 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ATXN2LQ8WWM7 1075 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MYOCQ99972 504 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 UNKQ9C0B0 810 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 KLC2Q9H0B6 622 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 AGO3Q9H9G7 860 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 DYRK4Q9NR20 520 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PDP2Q9P2J9 529 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 CEP250Q9BV73 2442 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 CDK5RAP2Q96SN8 1893 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MIF4GDA9UHW6 222 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 LIN7AO14910 233 aaPredicted RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 BUD23O43709 281 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 LHX1P48742 406 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PURAQ00577 322 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PPP1R26Q5T8A7 1209 aaPredicted RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PGM2Q96G03 612 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 KCNK16Q96T55 309 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ZNF518BQ9C0D4 1074 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PDZD7Q9H5P4 517 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ARHGEF3Q9NR81 526 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ETNK2Q9NVF9 386 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MRPS23Q9Y3D9 190 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 SMIM35A0A1B0GVV1 85 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 A0A1W2PQ45 241 aaPredicted RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 A0A1W2PQY0 241 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MSI1O43347 362 aaKnown RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 RIPK2O43353 540 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ACADSP16219 412 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 HDCP19113 662 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ADSSP30520 456 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 WASP42768 502 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MED21Q13503 144 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 CBX2Q14781 532 aaPredicted RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 PSMD5Q16401 504 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 SLC10A6Q3KNW5 377 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 EFHC1Q5JVL4 640 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 NLRP9Q7RTR0 991 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 TTC39CQ8N584 583 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 SNX19Q92543 992 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 CDKL2Q92772 493 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 TMEM121Q9BTD3 319 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 SHCBP1LQ9BZQ2 653 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 TLE6Q9H808 572 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 MARCOQ9UEW3 520 aaPredicted RBP11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ITGA11Q9UKX5 1188 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 RPS6KL1Q9Y6S9 549 aa11.16□□□□□ -0.62
FAM3A-221ENST00000612856 ARL5CA6NH57 179 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 A6NHS1 94 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 B2RBV5 119 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 RFC1P35251 1148 aaPredicted RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 SLC5A9Q2M3M2 681 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 UBAP2Q5T6F2 1119 aaKnown RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 IZUMO3Q5VZ72 239 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 RFWD3Q6PCD5 774 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 DENND5BQ6ZUT9 1274 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 PRUNE1Q86TP1 453 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ABRAQ8N0Z2 381 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ATP2A3Q93084 1043 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 CENPTQ96BT3 561 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 PHF12Q96QT6 1004 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 TM6SF2Q9BZW4 377 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 DPEP3Q9H4B8 488 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 DMAP1Q9NPF5 467 aaPredicted RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ARMCX1Q9P291 453 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 FARP1Q9Y4F1 1045 aaPredicted RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 MYBPHLA2RUH7 354 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 AMPD1P23109 780 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 YWHAQP27348 245 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 GALK1P51570 392 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 YWHAZP63104 245 aaKnown RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 CCDC142Q17RM4 750 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ZACNQ401N2 412 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 MMEL1Q495T6 779 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 C17orf99Q6UX52 265 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 B3GALNT2Q8NCR0 500 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 LNX1Q8TBB1 728 aaPredicted RBP11.15□□□□□ -0.62
FAM3A-221ENST00000612856 HDAC11Q96DB2 347 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ERVK-5Q9HDB9 667 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 HEY2Q9UBP5 337 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 ZMYM2Q9UBW7 1377 aa11.15□□□□□ -0.62
FAM3A-221ENST00000612856 CCDC22O60826 627 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 PEX11AO75192 247 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 TMCC1O94876 653 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 ARFIP2P53365 341 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 ACAP1Q15027 740 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 TAF5Q15542 800 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 MAPRE1Q15691 268 aaKnown RBP11.15□□□□□ -0.63
FAM3A-221ENST00000612856 RABGAP1LQ5R372 815 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 CPNE8Q86YQ8 564 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 CFAP52Q8N1V2 620 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 BLOC1S5Q8TDH9 187 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 DIS3LQ8TF46 1054 aaKnown RBP11.15□□□□□ -0.63
FAM3A-221ENST00000612856 EDEM3Q9BZQ6 932 aa11.15□□□□□ -0.63
FAM3A-221ENST00000612856 NDFIP2Q9NV92 336 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms