RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ANKRD52Q8NB46 1076 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 SLC4A11Q8NBS3 891 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 WFDC5Q8TCV5 224 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 DDI1Q8WTU0 396 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 CYB5D2Q8WUJ1 264 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 TSC1Q92574 1164 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 PAGE5Q96GU1 130 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 FAXDC2Q96IV6 333 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 CDK5RAP1Q96SZ6 601 aaKnown RBP6.39□□□□□ -1.39
VRK3-220ENST00000600259 CIPCQ9C0C6 399 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 NIF3L1Q9GZT8 377 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 LHX5Q9H2C1 402 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 MTG2Q9H4K7 406 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 PRORYQ9H606 182 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 MARCH2Q9P0N8 246 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 RASAL2Q9UJF2 1139 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 RCOR1Q9UKL0 485 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 INTS6Q9UL03 887 aaKnown RBP6.39□□□□□ -1.39
VRK3-220ENST00000600259 RAI2Q9Y5P3 530 aa6.39□□□□□ -1.39
VRK3-220ENST00000600259 CKAP5Q14008 2032 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 MAST4O15021 2626 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 GOLGA8CPA6NN73 597 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CBX4O00257 560 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PLK4O00444 970 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 VILLO15195 856 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PRB1P04280 392 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CYBBP04839 570 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TRIM49P0CI25 452 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TRIM49CP0CI26 452 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ACADMP11310 421 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CD58P19256 250 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PIK3CAP42336 1068 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 GCLMP48507 274 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CCT8P50990 548 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 GALCP54803 685 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CLDN6P56747 220 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 YWHAGP61981 247 aaKnown RBP eCLIP6.38□□□□□ -1.39
VRK3-220ENST00000600259 GSE1Q14687 1217 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 E2F5Q15329 346 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PKDCCQ504Y2 493 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ZCWPW2Q504Y3 356 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 MPPE1Q53F39 396 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ZNF394Q53GI3 561 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ADGRF1Q5T601 910 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PIK3R6Q5UE93 754 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 MBLAC2Q68D91 279 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PCSK4Q6UW60 755 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CHST9Q7L1S5 443 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 KANSL1Q7Z3B3 1105 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TMPRSS12Q86WS5 348 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 CACUL1Q86Y37 369 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 SAP25Q8TEE9 199 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 WFIKKN2Q8TEU8 576 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TATDN2Q93075 761 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TTC17Q96AE7 1141 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 PLD4Q96BZ4 506 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TMA16Q96EY4 203 aaKnown RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 MYEOVQ96EZ4 313 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 TMEM176AQ96HP8 235 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 MRGPRX3Q96LB0 322 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 HEXIM2Q96MH2 286 aaKnown RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 ZNF396Q96N95 335 aaPredicted RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 FAM129BQ96TA1 746 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ARID3AQ99856 593 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ULBP1Q9BZM6 244 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 BTBD1Q9H0C5 482 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 RSPH9Q9H1X1 276 aaPredicted RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 SGK2Q9HBY8 427 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 RTN4Q9NQC3 1192 aaKnown RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 CISHQ9NSE2 258 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ABCB8Q9NUT2 735 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 SERGEFQ9UGK8 458 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 SFMBT1Q9UHJ3 866 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 HBS1LQ9Y450 684 aaKnown RBP6.38□□□□□ -1.39
VRK3-220ENST00000600259 PCDHGA1Q9Y5H4 931 aa6.38□□□□□ -1.39
VRK3-220ENST00000600259 ARID1BQ8NFD5 2236 aaPredicted RBP6.37□□□□□ -1.39
VRK3-220ENST00000600259 GOLGA6L7A0A1B0GV03 622 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 A0A1W2PPC4 97 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 YJEFN3A6XGL0 299 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 E7ENQ6 273 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 TK2O00142 265 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 DFNA5O60443 496 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 FSBPO95073 299 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 KIF20AO95235 890 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 LATS1O95835 1130 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 ZBED1O96006 694 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 IGLV3-27P01718 113 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 DLDP09622 509 aaKnown RBP6.37□□□□□ -1.39
VRK3-220ENST00000600259 PABPC1P11940 636 aaKnown RBP6.37□□□□□ -1.39
VRK3-220ENST00000600259 SLC6A4P31645 630 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 CD70P32970 193 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 EIF2S3P41091 472 aaKnown RBP6.37□□□□□ -1.39
VRK3-220ENST00000600259 RXRGP48443 463 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 TKTL1P51854 596 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 RACK1P63244 317 aaKnown RBP6.37□□□□□ -1.39
VRK3-220ENST00000600259 ARID5BQ14865 1188 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 RTP5Q14D33 572 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 TEAD4Q15561 434 aa6.37□□□□□ -1.39
VRK3-220ENST00000600259 FAM133BQ5BKY9 247 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms