RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CCDC70Q6NSX1 233 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 ANKRD54Q6NXT1 300 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 LRRC31Q6UY01 552 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 C12orf76Q8N812 135 aaPredicted RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 TSC1Q92574 1164 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 AZIN2Q96A70 460 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 C1orf74Q96LT6 269 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 DDX50Q9BQ39 737 aaKnown RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 AP1M1Q9BXS5 423 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 FRMD8P1Q9BZ68 369 aaPredicted RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 RNF38Q9H0F5 515 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 SIK2Q9H0K1 926 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 ANLNQ9NQW6 1124 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 TMPRSS4Q9NRS4 437 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 CWC15Q9P013 229 aaKnown RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 LSM7Q9UK45 103 aaKnown RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 CPQQ9Y646 472 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 MYO7AQ13402 2215 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 STC2O76061 302 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 GLP2RO95838 553 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 IRF1P10914 325 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 GOT1P17174 413 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 GJA1P17302 382 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 POU3F3P20264 500 aaPredicted RBP15.97■□□□□ 0.15
UPF1-206ENST00000598471 TGM2P21980 687 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 CORO1AP31146 461 aaKnown RBP15.97■□□□□ 0.15
UPF1-206ENST00000598471 CCR2P41597 374 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 KCNQ1P51787 676 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 DYNLT1P63172 113 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 NTHL1P78549 312 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 C2orf54Q08AI8 447 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 SEMA3BQ13214 749 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 CCDC85BQ15834 202 aaPredicted RBP15.97■□□□□ 0.15
UPF1-206ENST00000598471 PRSS36Q5K4E3 855 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 RFX8Q6ZV50 586 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 GPR149Q86SP6 731 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 CHSY1Q86X52 802 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 TBC1D31Q96DN5 1066 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 TCEAL4Q96EI5 215 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 RUNDC3BQ96NL0 473 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 CATSPERBQ9H7T0 1116 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 RBM12Q9NTZ6 932 aaKnown RBP15.97■□□□□ 0.15
UPF1-206ENST00000598471 SMPD4Q9NXE4 827 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 DONSONQ9NYP3 566 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 HS3ST4Q9Y661 456 aa15.97■□□□□ 0.15
UPF1-206ENST00000598471 EFCAB8A8MWE9 144 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 I6L893 689 aaPredicted RBP15.96■□□□□ 0.15
UPF1-206ENST00000598471 APOC4-APOC2K7ER74 178 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 FGF10O15520 208 aaPredicted RBP15.96■□□□□ 0.15
UPF1-206ENST00000598471 ACSL4O60488 711 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 PHF2O75151 1096 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 LRIG2O94898 1065 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 APOC2P02655 101 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 IL4RP24394 825 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 EPHB2P29323 1055 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 CHRNA3P32297 505 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 MLLT6P55198 1093 aaPredicted RBP15.96■□□□□ 0.15
UPF1-206ENST00000598471 ADAM15Q13444 863 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 SLC5A9Q2M3M2 681 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 MS4A13Q5J8X5 152 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 SLC9A4Q6AI14 798 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 CES5AQ6NT32 575 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 ANKS1BQ7Z6G8 1248 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 CMTM8Q8IZV2 173 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 C12orf50Q8NA57 414 aaPredicted RBP15.96■□□□□ 0.15
UPF1-206ENST00000598471 PCDH19Q8TAB3 1148 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 PPM1EQ8WY54 764 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 SLC22A12Q96S37 553 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 CYP2S1Q96SQ9 504 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 HERPUD2Q9BSE4 406 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 SLC46A2Q9BY10 475 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 ARHGEF4Q9NR80 690 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 GKN1Q9NS71 199 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 ARHGAP26Q9UNA1 814 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 ZNF510Q9Y2H8 683 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 SH3BP1Q9Y3L3 701 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 OBSL1O75147 1896 aa15.96■□□□□ 0.15
UPF1-206ENST00000598471 CHD7Q9P2D1 2997 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 TCRBV7S2A1N4TA0A589 114 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 E9PAM4 449 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 F5H5T6 163 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 FAM72CH0Y354 149 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 LINC01565O15544 149 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 MOSPD3O75425 235 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 CEBPBP17676 345 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 FSHRP23945 695 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 SERPINB6P35237 376 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 FNTAP49354 379 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 DPYSQ14117 519 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 SIX1Q15475 284 aaPredicted RBP15.95■□□□□ 0.14
UPF1-206ENST00000598471 CCNG2Q16589 344 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 CYP1B1Q16678 543 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 STXBP5Q5T5C0 1151 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 FAM72AQ5TYM5 149 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 PIK3R6Q5UE93 754 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 RAP1GAP2Q684P5 730 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 FAM72DQ6L9T8 149 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 RWDD4Q6NW29 188 aaKnown RBP15.95■□□□□ 0.14
UPF1-206ENST00000598471 TMCO3Q6UWJ1 677 aa15.95■□□□□ 0.14
UPF1-206ENST00000598471 BZW1Q7L1Q6 419 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms