RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 EGFLAMQ63HQ2 1017 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 E4F1Q66K89 784 aaPredicted RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 PHLDB2Q86SQ0 1253 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 PHF13Q86YI8 300 aaPredicted RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 ZNF513Q8N8E2 541 aaPredicted RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 RNF214Q8ND24 703 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 KCNV2Q8TDN2 545 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 NKD2Q969F2 451 aaPredicted RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 PRICKLE1Q96MT3 831 aaPredicted RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 ADAM33Q9BZ11 813 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 METTL5Q9NRN9 209 aaKnown RBP14.37□□□□□ -0.11
UPF1-205ENST00000598209 AIPL1Q9NZN9 384 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 ADAM22Q9P0K1 906 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 CALCOCO1Q9P1Z2 691 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 SLC12A6Q9UHW9 1150 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 TMEM59LQ9UK28 342 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 HCN2Q9UL51 889 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 STARD13Q9Y3M8 1113 aa14.37□□□□□ -0.11
UPF1-205ENST00000598209 SPAG17Q6Q759 2223 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 A0A1W2PQJ5 194 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 TYW5A2RUC4 315 aaKnown RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 KCNU1A8MYU2 1149 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 SGK1O00141 431 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 ABCB4P21439 1286 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 PRKCIP41743 596 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 PXNP49023 591 aaPredicted RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 MRE11P49959 708 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 GEN1Q17RS7 908 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 SLC25A52Q3SY17 297 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 MS4A13Q5J8X5 152 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 EOGTQ5NDL2 527 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 MPP7Q5T2T1 576 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 RAP1GAP2Q684P5 730 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 TRNP1Q6NT89 227 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 ARCQ7LC44 396 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 TRMT11Q7Z4G4 463 aaKnown RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 ANKS1BQ7Z6G8 1248 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 ALYREFQ86V81 257 aaKnown RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 WDR5BQ86VZ2 330 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 LONP2Q86WA8 852 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 CHSY1Q86X52 802 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 LGI2Q8N0V4 545 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 CAMKK1Q8N5S9 505 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 HJURPQ8NCD3 748 aaPredicted RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 NT5C3BQ969T7 300 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 MYEOVQ96EZ4 313 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 TBCBQ99426 244 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 SYT11Q9BT88 431 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 XPO4Q9C0E2 1151 aaKnown RBP14.36□□□□□ -0.11
UPF1-205ENST00000598209 SEMA4AQ9H3S1 761 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 HAUS4Q9H6D7 363 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 PIGVQ9NUD9 493 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 STIM2Q9P246 746 aa14.36□□□□□ -0.11
UPF1-205ENST00000598209 ADAM23O75077 832 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 APBB3O95704 486 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 CALB1P05937 261 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 TPM3P06753 285 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 TACR2P21452 398 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 GSCP56915 257 aaPredicted RBP14.35□□□□□ -0.11
UPF1-205ENST00000598209 RPS24P62847 133 aaKnown RBP14.35□□□□□ -0.11
UPF1-205ENST00000598209 DEUP1Q05D60 604 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 KLHL30Q0D2K2 578 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 CRY1Q16526 586 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 RNF43Q68DV7 783 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 ACAD10Q6JQN1 1059 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 TMEM92Q6UXU6 159 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 SND1Q7KZF4 910 aaKnown RBP eCLIP14.35□□□□□ -0.11
UPF1-205ENST00000598209 MON1BQ7L1V2 547 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 EMC1Q8N766 993 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 TSTD1Q8NFU3 115 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 OLIG1Q8TAK6 271 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 WFDC5Q8TCV5 224 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 IQCDQ96DY2 449 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 PGAP3Q96FM1 320 aaPredicted RBP14.35□□□□□ -0.11
UPF1-205ENST00000598209 CFAP57Q96MR6 1250 aa14.35□□□□□ -0.11
UPF1-205ENST00000598209 PRR23AA6NEV1 266 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 F5H5T6 163 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CBFA2T2O43439 604 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 GJB6O95452 261 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 F9P00740 461 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 SKILP12757 684 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 HNRNPLP14866 589 aaKnown RBP eCLIP14.34□□□□□ -0.11
UPF1-205ENST00000598209 HLA-FP30511 346 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 NTSR1P30989 418 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 WASP42768 502 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CXCR3P49682 368 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 DGKEP52429 567 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 C1QBPQ07021 282 aaKnown RBP14.34□□□□□ -0.11
UPF1-205ENST00000598209 MTA1Q13330 715 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 BRMS1LQ5PSV4 323 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 ASCL5Q7RTU5 278 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 ZNF571Q7Z3V5 609 aaPredicted RBP14.34□□□□□ -0.11
UPF1-205ENST00000598209 MFN1Q8IWA4 741 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CHPFQ8IZ52 775 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CFAP52Q8N1V2 620 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 C3orf20Q8ND61 904 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 JOSD2Q8TAC2 188 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 WFIKKN2Q8TEU8 576 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 UCMAQ8WVF2 138 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CPLX3Q8WVH0 158 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms