RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SATB1Q01826 763 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 E2F5Q15329 346 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 C2orf27AQ580R0 203 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 TDRD12Q587J7 1177 aaKnown RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 MS4A13Q5J8X5 152 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 BRMS1LQ5PSV4 323 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 C10orf76Q5T2E6 689 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 ACBD5Q5T8D3 534 aaPredicted RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 E4F1Q66K89 784 aaPredicted RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 NADSYN1Q6IA69 706 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 RFWD3Q6PCD5 774 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SARM1Q6SZW1 724 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SYT13Q7L8C5 426 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 TRMT11Q7Z4G4 463 aaKnown RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 PHLDB2Q86SQ0 1253 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 CCDC117Q8IWD4 279 aaPredicted RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 MCOLN2Q8IZK6 566 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 USP33Q8TEY7 942 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 TBCBQ99426 244 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 TRIM5Q9C035 493 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SLC8A2Q9UPR5 921 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 TMCO5BA8MYB1 307 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 TRIM24O15164 1050 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 TBL1XO60907 577 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 RTN2O75298 545 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 HOXD9P28356 352 aaPredicted RBP15.57■□□□□ 0.08
UPF1-202ENST00000594243 SDC4P31431 198 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 TIE1P35590 1138 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 KIR2DL1P43626 348 aaPredicted RBP15.57■□□□□ 0.08
UPF1-202ENST00000594243 CXCR3P49682 368 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 NHLH1Q02575 133 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 MESP2Q0VG99 397 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 TSR1Q2NL82 804 aaKnown RBP15.57■□□□□ 0.08
UPF1-202ENST00000594243 HGSNATQ68CP4 663 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 ZC3H14Q6PJT7 736 aaKnown RBP15.57■□□□□ 0.08
UPF1-202ENST00000594243 VSTM4Q8IW00 320 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 DRC7Q8IY82 874 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 CAMKK1Q8N5S9 505 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 EMC1Q8N766 993 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 HJURPQ8NCD3 748 aaPredicted RBP15.57■□□□□ 0.08
UPF1-202ENST00000594243 RXFP2Q8WXD0 754 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 P2RY11Q96G91 374 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 CFAP57Q96MR6 1250 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.57■□□□□ 0.08
UPF1-202ENST00000594243 PIGVQ9NUD9 493 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 CALCOCO1Q9P1Z2 691 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 CACNA1HO95180 2353 aa15.57■□□□□ 0.08
UPF1-202ENST00000594243 C2CD4BA6NLJ0 364 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 F5H5T6 163 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 DDX3XO00571 662 aaKnown RBP eCLIP15.56■□□□□ 0.08
UPF1-202ENST00000594243 TIMM44O43615 452 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 ENDOD1O94919 500 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 FTLP02792 175 aaPredicted RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 DESP17661 470 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 TFE3P19532 575 aaPredicted RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 TACR2P21452 398 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 HOXD11P31277 338 aaPredicted RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 RDXP35241 583 aaKnown RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 EOGTQ5NDL2 527 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 EMC10Q5UCC4 262 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 RAP1GAP2Q684P5 730 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 SDE2Q6IQ49 451 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 DNAJC24Q6P3W2 148 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 PKN3Q6P5Z2 889 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 TSSK4Q6SA08 328 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 BNIPLQ7Z465 357 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 CHSY1Q86X52 802 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 LGI2Q8N0V4 545 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 ZNF513Q8N8E2 541 aaPredicted RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 OR8K1Q8NGG5 319 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 JOSD2Q8TAC2 188 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 OLIG1Q8TAK6 271 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 UCMAQ8WVF2 138 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 TKTL2Q9H0I9 626 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 RBSNQ9H1K0 784 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 PARVAQ9NVD7 372 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 ZNHIT6Q9NWK9 470 aaKnown RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 ARHGEF38Q9NXL2 777 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 TAS2R14Q9NYV8 317 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 ADAMTS1Q9UHI8 967 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 XPO7Q9UIA9 1087 aaKnown RBP15.56■□□□□ 0.08
UPF1-202ENST00000594243 MMP17Q9ULZ9 603 aa15.56■□□□□ 0.08
UPF1-202ENST00000594243 PRRT4C9JH25 899 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 K7ESF4 209 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 GPD1P21695 349 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 RRM1P23921 792 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 HOXA6P31267 233 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 HNRNPH3P31942 346 aaKnown RBP15.55■□□□□ 0.08
UPF1-202ENST00000594243 RFC1P35251 1148 aaPredicted RBP15.55■□□□□ 0.08
UPF1-202ENST00000594243 PTPN9P43378 593 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 SGSHP51688 502 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 ATP11AP98196 1134 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 DMC1Q14565 340 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 EIF4HQ15056 248 aaKnown RBP15.55■□□□□ 0.08
UPF1-202ENST00000594243 ARL13BQ3SXY8 428 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 CCDC14Q49A88 953 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 RABGAP1LQ5R372 815 aa15.55■□□□□ 0.08
UPF1-202ENST00000594243 TTC39BQ5VTQ0 682 aaPredicted RBP15.55■□□□□ 0.08
UPF1-202ENST00000594243 OTUD1Q5VV17 481 aaPredicted RBP15.55■□□□□ 0.08
UPF1-202ENST00000594243 TRNP1Q6NT89 227 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms