RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 DNAJC3Q13217 504 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 PDK1Q15118 436 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 UNC5AQ6ZN44 842 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 DENND5BQ6ZUT9 1274 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 SH2D5Q6ZV89 423 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 MYLPFQ96A32 169 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 UROC1Q96N76 676 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 EBNA1BP2Q99848 306 aaKnown RBP20.31■□□□□ 0.84
CLIP3-206ENST00000593074 ACBD6Q9BR61 282 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 TRPV6Q9H1D0 765 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 EIF2B3Q9NR50 452 aaKnown RBP20.31■□□□□ 0.84
CLIP3-206ENST00000593074 ZNF638Q14966 1978 aaKnown RBP20.31■□□□□ 0.84
CLIP3-206ENST00000593074 I3L4J1 428 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 CREB3O43889 395 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 DNAJC8O75937 253 aaPredicted RBP20.31■□□□□ 0.84
CLIP3-206ENST00000593074 GNRH1P01148 92 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 MT-ND3P03897 115 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 USP17L7P0C7H9 530 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 SLC20A2Q08357 652 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 FAAP100Q0VG06 881 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 FAM171BQ6P995 826 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 CD300LGQ6UXG3 332 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 FAM47EQ6ZV65 393 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 LRRC6Q86X45 466 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 SPOCK2Q92563 424 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 NR2E3Q9Y5X4 410 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 THSD7BQ9C0I4 1608 aa20.31■□□□□ 0.84
CLIP3-206ENST00000593074 TDRD15B5MCY1 1934 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 I6L893 689 aaPredicted RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 RNF103O00237 685 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 PPP1R12AO14974 1030 aaPredicted RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 STK10O94804 968 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 MLNP12872 115 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 BRCC3P46736 316 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 SLC18A2Q05940 514 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 PAN2Q504Q3 1202 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 FBXW10Q5XX13 1052 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 RNF43Q68DV7 783 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 ZNF598Q86UK7 904 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 TCP10LQ8TDR4 215 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 LRRC8CQ8TDW0 803 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 P2RY11Q96G91 374 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 SERAC1Q96JX3 654 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 PKMYT1Q99640 499 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 ANLNQ9NQW6 1124 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 FBXW11Q9UKB1 542 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 DSEQ9UL01 958 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 PHTF1Q9UMS5 762 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 M0QZQ0 153 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 EDF1O60869 148 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 NCAM1P13591 858 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 ADRA1DP25100 572 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 HCAR3P49019 387 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 INTS6LQ5JSJ4 861 aaKnown RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 GBP7Q8N8V2 638 aaPredicted RBP20.3■□□□□ 0.84
CLIP3-206ENST00000593074 GSDMBQ8TAX9 411 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 ADAM32Q8TC27 787 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 IRGQQ8WZA9 623 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 APOPT1Q96IL0 206 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 FERMT1Q9BQL6 677 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 RHOBTB2Q9BYZ6 727 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 RGS18Q9NS28 235 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 RAD54BQ9Y620 910 aa20.3■□□□□ 0.84
CLIP3-206ENST00000593074 CXorf49A8MYA2 514 aaPredicted RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 FAM72CH0Y354 149 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 GOLGA8RI6L899 631 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 ZNF189O75820 626 aaPredicted RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 INHAP05111 366 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 ALADP13716 330 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 GRIA1P42261 906 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 NEK3P51956 506 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 SARNPP82979 210 aaKnown RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 AP1B1Q10567 949 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 FAM72AQ5TYM5 149 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 TTC39BQ5VTQ0 682 aaPredicted RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 LHX8Q68G74 356 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 FAM72DQ6L9T8 149 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 DCLRE1AQ6PJP8 1040 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 FAM72BQ86X60 149 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 SCML4Q8N228 414 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 MPP5Q8N3R9 675 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 ZNF276Q8N554 614 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 PPM1NQ8N819 430 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 COLGALT1Q8NBJ5 622 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 KLF6Q99612 283 aaPredicted RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 PRDM12Q9H4Q4 367 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 HMX1Q9NP08 348 aaPredicted RBP20.29■□□□□ 0.84
CLIP3-206ENST00000593074 HAUS2Q9NVX0 235 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 DDIT4Q9NX09 232 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 KLHL14Q9P2G3 628 aa20.29■□□□□ 0.84
CLIP3-206ENST00000593074 FAM159BA6NKW6 160 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 F9P00740 461 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 AMHP03971 560 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 WASHC5Q12768 1159 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 GALNTL6Q49A17 601 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 PM20D1Q6GTS8 502 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 CTU1Q7Z7A3 348 aaKnown RBP20.28■□□□□ 0.84
CLIP3-206ENST00000593074 HASPINQ8TF76 798 aa20.28■□□□□ 0.84
CLIP3-206ENST00000593074 APBB2Q92870 758 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms