RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 MAP3K13O43283 966 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 TIMM44O43615 452 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 GFPT2O94808 682 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 EPN2O95208 641 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 GABRG2P18507 467 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 PITX1P78337 314 aaPredicted RBP21.2■□□□□ 0.98
SS18-224ENST00000584083 SLC6A3Q01959 620 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 UBXN1Q04323 297 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 BYSLQ13895 437 aaKnown RBP21.2■□□□□ 0.98
SS18-224ENST00000584083 NCAPHQ15003 741 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 EIF4HQ15056 248 aaKnown RBP21.2■□□□□ 0.98
SS18-224ENST00000584083 SYCP1Q15431 976 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 CCDC6Q16204 474 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 CSRP2Q16527 193 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 ANO6Q4KMQ2 910 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 KIAA1211LQ6NV74 962 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 NOP9Q86U38 636 aaKnown RBP21.2■□□□□ 0.98
SS18-224ENST00000584083 HJURPQ8NCD3 748 aaPredicted RBP21.2■□□□□ 0.98
SS18-224ENST00000584083 SORCS1Q8WY21 1168 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 SLC2A13Q96QE2 648 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 ABCB8Q9NUT2 735 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 DDIT4Q9NX09 232 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 COX16Q9P0S2 106 aa21.2■□□□□ 0.98
SS18-224ENST00000584083 NUP205Q92621 2012 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 IGLV3-25P01717 112 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 BCKDHBP21953 392 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 HLA-FP30511 346 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 P2RY2P41231 377 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 STARD3Q14849 445 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 MPP7Q5T2T1 576 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 OLFML1Q6UWY5 402 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 NEK11Q8NG66 645 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 WFIKKN2Q8TEU8 576 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 DDX1Q92499 740 aaKnown RBP21.19■□□□□ 0.98
SS18-224ENST00000584083 RNF34Q969K3 372 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 RMDN1Q96DB5 314 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 SPAG5Q96R06 1193 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 NUCKS1Q9H1E3 243 aaKnown RBP21.19■□□□□ 0.98
SS18-224ENST00000584083 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.19■□□□□ 0.98
SS18-224ENST00000584083 THAP10Q9P2Z0 257 aaPredicted RBP21.19■□□□□ 0.98
SS18-224ENST00000584083 SLC12A6Q9UHW9 1150 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 SIK3Q9Y2K2 1263 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.19■□□□□ 0.98
SS18-224ENST00000584083 PLXND1Q9Y4D7 1925 aa21.19■□□□□ 0.98
SS18-224ENST00000584083 CEP192Q8TEP8 1941 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 MMEP08473 750 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 ZNF18P17022 549 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 CDH5P33151 784 aaPredicted RBP21.18■□□□□ 0.98
SS18-224ENST00000584083 SOX5P35711 763 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 IL12RB1P42701 662 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 RNASE9P60153 205 aaKnown RBP21.18■□□□□ 0.98
SS18-224ENST00000584083 CREB5Q02930 508 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 ZNF234Q14588 700 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 TMEM215Q68D42 235 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 PRR23CQ6ZRP0 262 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 CHST9Q7L1S5 443 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 SLC26A9Q7LBE3 791 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 ERICH1Q86X53 443 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 ZDHHC17Q8IUH5 632 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 CCDC117Q8IWD4 279 aaPredicted RBP21.18■□□□□ 0.98
SS18-224ENST00000584083 ATP6V0D2Q8N8Y2 350 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 MSANTD4Q8NCY6 345 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 EPS8L1Q8TE68 723 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 C18orf8Q96DM3 657 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 BTN2A3PQ96KV6 586 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 PRICKLE1Q96MT3 831 aaPredicted RBP21.18■□□□□ 0.98
SS18-224ENST00000584083 CALCOCO1Q9P1Z2 691 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 XPO7Q9UIA9 1087 aaKnown RBP21.18■□□□□ 0.98
SS18-224ENST00000584083 GGA2Q9UJY4 613 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 DAAM1Q9Y4D1 1078 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 PCDHGA5Q9Y5G8 931 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 DMXL1Q9Y485 3027 aa21.18■□□□□ 0.98
SS18-224ENST00000584083 LRRC10BA6NIK2 292 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 PRR5-ARHGAP8B1AHC4 643 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 EPHB6O15197 1021 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 SYNCRIPO60506 623 aaKnown RBP21.17■□□□□ 0.98
SS18-224ENST00000584083 DAB1O75553 588 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 LSM8O95777 96 aaKnown RBP21.17■□□□□ 0.98
SS18-224ENST00000584083 SLC2A3P11169 496 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 PABPC1P11940 636 aaKnown RBP21.17■□□□□ 0.98
SS18-224ENST00000584083 NDUFV2P19404 249 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 MPLP40238 635 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 RPS24P62847 133 aaKnown RBP21.17■□□□□ 0.98
SS18-224ENST00000584083 ARHGAP8P85298 464 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 NME3Q13232 169 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 RSPO4Q2I0M5 234 aaPredicted RBP21.17■□□□□ 0.98
SS18-224ENST00000584083 MAP7D1Q3KQU3 841 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 MS4A13Q5J8X5 152 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 RAP1GAP2Q684P5 730 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 PMS2CLQ68D20 193 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 SERPINA13PQ6UXR4 307 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 LPCAT2Q7L5N7 544 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 CHSY1Q86X52 802 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 MFN1Q8IWA4 741 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 LGI2Q8N0V4 545 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 AHI1Q8N157 1196 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 CFAP52Q8N1V2 620 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 CARNMT1Q8N4J0 409 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 FRMD1Q8N878 549 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 ZNF557Q8N988 423 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms