RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 OXTRP30559 389 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 SGSHP51688 502 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 WDR45BQ5MNZ6 344 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 IRF2BP1Q8IU81 584 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 CADM4Q8NFZ8 388 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 DNASE2BQ8WZ79 361 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 SIPA1Q96FS4 1042 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 TOE1Q96GM8 510 aaKnown RBP21.31■■□□□ 1
SHMT1-209ENST00000582653 IRX2Q9BZI1 471 aaPredicted RBP21.31■■□□□ 1
SHMT1-209ENST00000582653 SUSD2Q9UGT4 822 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 NFE2L3Q9Y4A8 694 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 PI4KAP42356 2102 aa21.31■■□□□ 1
SHMT1-209ENST00000582653 OPHN1O60890 802 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 IGLV3-27P01718 113 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 NCAM1P13591 858 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 GNSP15586 552 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 HLA-FP30511 346 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 TPMTP51580 245 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 COPAP53621 1224 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 FOXC1Q12948 553 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 RFWD3Q6PCD5 774 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 TRIM65Q6PJ69 517 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 KIAA0907Q7Z7F0 614 aaPredicted RBP21.3■■□□□ 1
SHMT1-209ENST00000582653 ZNF606Q8WXB4 792 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 PRCCQ92733 491 aaPredicted RBP21.3■■□□□ 1
SHMT1-209ENST00000582653 GOLGA1Q92805 767 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 AZIN2Q96A70 460 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 CYTH4Q9UIA0 394 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 PLA2G4CQ9UP65 541 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 NAALADL1Q9UQQ1 740 aa21.3■■□□□ 1
SHMT1-209ENST00000582653 CHD8Q9HCK8 2581 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 KCNJ18B7U540 433 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 FBXO21O94952 628 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 IGLV3-19P01714 112 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 EPHX1P07099 455 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 PRKCHP24723 683 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 MAOBP27338 520 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 SLC6A4P31645 630 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 RPL34P49207 117 aaKnown RBP21.29■■□□□ 1
SHMT1-209ENST00000582653 TBX4P57082 545 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 ARID5AQ03989 594 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 ARHGAP44Q17R89 818 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 UNC45BQ8IWX7 931 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 MINDY1Q8N5J2 469 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 FAM149B1Q96BN6 582 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 NUP58Q9BVL2 599 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 GPR174Q9BXC1 333 aa21.29■■□□□ 1
SHMT1-209ENST00000582653 DNAAF2Q9NVR5 837 aaKnown RBP21.29■■□□□ 1
SHMT1-209ENST00000582653 CACNA1BQ00975 2339 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 BECN2A8MW95 431 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 THAP12O43422 761 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 PROS1P07225 676 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 C7P10643 843 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 ACADMP11310 421 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 USP8P40818 1118 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 SLC14A1Q13336 389 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 PLEKHG6Q3KR16 790 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 FAM133BQ5BKY9 247 aaKnown RBP21.28■■□□□ 1
SHMT1-209ENST00000582653 MPP7Q5T2T1 576 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 PIK3R6Q5UE93 754 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 SYPL2Q5VXT5 272 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 SERPINA13PQ6UXR4 307 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.28■■□□□ 1
SHMT1-209ENST00000582653 MLKLQ8NB16 471 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 ADAM32Q8TC27 787 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 DQX1Q8TE96 717 aaKnown RBP21.28■■□□□ 1
SHMT1-209ENST00000582653 WFIKKN2Q8TEU8 576 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 CYB5D2Q8WUJ1 264 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 TMEM245Q9H330 911 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 ABCB8Q9NUT2 735 aa21.28■■□□□ 1
SHMT1-209ENST00000582653 ASCC3Q8N3C0 2202 aaKnown RBP21.28■■□□□ 1
SHMT1-209ENST00000582653 ZFHX4Q86UP3 3567 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 METTL12A8MUP2 240 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 MED7O43513 233 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 ACSL4O60488 711 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 TBL1XO60907 577 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 HLA-EP13747 358 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 CD59P13987 128 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 GNA15P30679 374 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 SLC11A2P49281 568 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 RING1Q06587 406 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 CAMK2GQ13555 558 aaPredicted RBP21.27■■□□□ 1
SHMT1-209ENST00000582653 NUGGCQ68CJ6 796 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 NADSYN1Q6IA69 706 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 GBP6Q6ZN66 633 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 CHST9Q7L1S5 443 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 ENOSF1Q7L5Y1 443 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 ADIPOR2Q86V24 386 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 WFDC5Q8TCV5 224 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 MYEOVQ96EZ4 313 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 FCRL2Q96LA5 508 aaPredicted RBP21.27■■□□□ 1
SHMT1-209ENST00000582653 SLC4A5Q9BY07 1137 aa21.27■■□□□ 1
SHMT1-209ENST00000582653 E5RJQ4 531 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 IRAK2O43187 625 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 PAPSS1O43252 624 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-209ENST00000582653 GJB3O75712 270 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 TOP3BO95985 862 aaKnown RBP21.26■□□□□ 0.99
SHMT1-209ENST00000582653 PON1P27169 355 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 ACADSBP45954 432 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 MTIF2P46199 727 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms