RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CDC25CP30307 473 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 SNX1Q13596 522 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 NADSYN1Q6IA69 706 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 PSTKQ8IV42 348 aaKnown RBP25.98■■□□□ 1.75
SHMT1-207ENST00000580002 MAP7D3Q8IWC1 876 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 CCDC33Q8N5R6 958 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 LRRN4Q8WUT4 740 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 CDK5RAP1Q96SZ6 601 aaKnown RBP25.98■■□□□ 1.75
SHMT1-207ENST00000580002 KRT12Q99456 494 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 EYSQ5T1H1 3165 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 LRIG2O94898 1065 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 PECAM1P16284 738 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 IRAK1P51617 712 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 NNTQ13423 1086 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 CBX2Q14781 532 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 GPR158Q5T848 1215 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 TTC27Q6P3X3 843 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 ZSWIM3Q96MP5 696 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 HAPLN3Q96S86 360 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 CDCA3Q99618 268 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 ZNF670Q9BS34 389 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 C10orf88Q9H8K7 445 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 PIDD1Q9HB75 910 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 NEU3Q9UQ49 428 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 HBS1LQ9Y450 684 aaKnown RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 CPQQ9Y646 472 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 EEF2KO00418 725 aaKnown RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 KCNJ1P48048 391 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 DLX2Q07687 328 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-207ENST00000580002 MS4A13Q5J8X5 152 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 TEX35Q5T0J7 233 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 SYCE2Q6PIF2 218 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 C1orf228Q6PIY5 440 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 BBS12Q6ZW61 710 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 TADA2BQ86TJ2 420 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 PLD5Q8N7P1 536 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 OSBPL2Q9H1P3 480 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 MTCH2Q9Y6C9 303 aa25.97■■□□□ 1.75
SHMT1-207ENST00000580002 CEBPBP17676 345 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 CETN2P41208 172 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 AIF1P55008 147 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 MLLT6P55198 1093 aaPredicted RBP25.96■■□□□ 1.75
SHMT1-207ENST00000580002 RAP1GAP2Q684P5 730 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 DENND1CQ8IV53 801 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 TP53INP2Q8IXH6 220 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 EFHBQ8N7U6 833 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 MAK16Q9BXY0 300 aaKnown RBP25.96■■□□□ 1.75
SHMT1-207ENST00000580002 ARHGEF4Q9NR80 690 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 DPP7Q9UHL4 492 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 CCL26Q9Y258 94 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 DENND4CQ5VZ89 1909 aa25.96■■□□□ 1.75
SHMT1-207ENST00000580002 TJP3O95049 919 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 APOEP02649 317 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 RING1Q06587 406 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 DPYSQ14117 519 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 RFX8Q6ZV50 586 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 RIN3Q8TB24 985 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 GCNAQ96QF7 691 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 NAP1L3Q99457 506 aaPredicted RBP25.95■■□□□ 1.75
SHMT1-207ENST00000580002 DCLK3Q9C098 648 aa25.95■■□□□ 1.75
SHMT1-207ENST00000580002 A0A1W2PPC1 479 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 TRDMT1O14717 391 aaKnown RBP25.95■■□□□ 1.74
SHMT1-207ENST00000580002 GREM1O60565 184 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 CKMP06732 381 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 ARL4AP40617 200 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 SLC10A2Q12908 348 aaPredicted RBP25.95■■□□□ 1.74
SHMT1-207ENST00000580002 SLC9A4Q6AI14 798 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 ZNF683Q8IZ20 524 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 ATP6V0D2Q8N8Y2 350 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 LRRC1Q9BTT6 524 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 SFXN1Q9H9B4 322 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 VANGL2Q9ULK5 521 aa25.95■■□□□ 1.74
SHMT1-207ENST00000580002 SLC2A3P11169 496 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 ERCC2P18074 760 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 CORO1AP31146 461 aaKnown RBP25.94■■□□□ 1.74
SHMT1-207ENST00000580002 SLC6A4P31645 630 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 TPI1P60174 286 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 COG7P83436 770 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 ADAM15Q13444 863 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 AUHQ13825 339 aaKnown RBP25.94■■□□□ 1.74
SHMT1-207ENST00000580002 ERCC6LQ2NKX8 1250 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 MANEALQ5VSG8 457 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 NCBP2-AS2Q69YL0 99 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 RFWD3Q6PCD5 774 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 ST13P5Q8NFI4 369 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-207ENST00000580002 MYRIPQ8NFW9 859 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 MAGOHBQ96A72 148 aaKnown RBP25.94■■□□□ 1.74
SHMT1-207ENST00000580002 BTN2A3PQ96KV6 586 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 PRMT1Q99873 361 aaKnown RBP25.94■■□□□ 1.74
SHMT1-207ENST00000580002 MPP6Q9NZW5 540 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 CLEC1BQ9P126 229 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 EFR3BQ9Y2G0 817 aa25.94■■□□□ 1.74
SHMT1-207ENST00000580002 H3BRJ5 948 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 IGFBP4P22692 258 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 OTUD4Q01804 1114 aaKnown RBP25.93■■□□□ 1.74
SHMT1-207ENST00000580002 GBE1Q04446 702 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 RWDD4Q6NW29 188 aaKnown RBP25.93■■□□□ 1.74
SHMT1-207ENST00000580002 ANKRD54Q6NXT1 300 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 TMEM184AQ6ZMB5 413 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 MMGT1Q8N4V1 131 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms