RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CKAP4Q07065 602 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 DLX2Q07687 328 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 SEMA3BQ13214 749 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 ZNF211Q13398 564 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 CA9Q16790 459 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 WHAMMP3Q1A5X7 153 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 PPP6R3Q5H9R7 873 aaPredicted RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 CCDC181Q5TID7 509 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MAIP1Q8WWC4 291 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MYLIPQ8WY64 445 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 TSC1Q92574 1164 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 FAF2Q96CS3 445 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 CALN1Q9BXU9 219 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MAK16Q9BXY0 300 aaKnown RBP11.12□□□□□ -0.63
SS18-213ENST00000579640 OSBPL8Q9BZF1 889 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 GKN1Q9NS71 199 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 TDP1Q9NUW8 608 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 SMPD4Q9NXE4 827 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 OR12D3Q9UGF7 316 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 CD207Q9UJ71 328 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 STOML2Q9UJZ1 356 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 SH3BP1Q9Y3L3 701 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 MRFAP1Q9Y605 127 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 HS3ST4Q9Y661 456 aa11.12□□□□□ -0.63
SS18-213ENST00000579640 NUP210Q8TEM1 1887 aaPredicted RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 hCG_1818297A0A087WSY0 165 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 LEFTY2O00292 366 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 EEF2KO00418 725 aaKnown RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 IRF1P10914 325 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 FOSL2P15408 326 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 TFDP2Q14188 446 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 LRRC31Q6UY01 552 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 HTR3DQ70Z44 454 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 GET4Q7L5D6 327 aaPredicted RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 SLC13A5Q86YT5 568 aaPredicted RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 CREG2Q8IUH2 290 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 NPAS3Q8IXF0 933 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 DEFB123Q8N688 67 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 SMRP1Q8NCR6 262 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 ING5Q8WYH8 240 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 FGF13Q92913 245 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 RRAGDQ9NQL2 400 aaPredicted RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 TMPRSS4Q9NRS4 437 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 STIM2Q9P246 746 aa11.11□□□□□ -0.63
SS18-213ENST00000579640 ZFP37Q9Y6Q3 630 aaPredicted RBP11.11□□□□□ -0.63
SS18-213ENST00000579640 E2F8A0AVK6 867 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 ZNF185O15231 689 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 TJP3O95049 919 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 FGGP02679 453 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 CD48P09326 243 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 ZFXP17010 805 aaPredicted RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 HOXC13P31276 330 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 TPI1P60174 286 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 USP4Q13107 963 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 ANKRD20A8PQ5CZ79 823 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 MS4A13Q5J8X5 152 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 PIK3R6Q5UE93 754 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 Q6ZNB5 142 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 Q7L0L9 218 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 DENND1CQ8IV53 801 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 ARID3BQ8IVW6 561 aaPredicted RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 PYROXD2Q8N2H3 581 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 CELF5Q8N6W0 485 aaKnown RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 ZSCAN18Q8TBC5 510 aaPredicted RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 ADAMTS19Q8TE59 1207 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 SH3RF2Q8TEC5 729 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 USP13Q92995 863 aaPredicted RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 CAPZA3Q96KX2 299 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 GUCD1Q96NT3 240 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 CSPG4P5Q96PW8 444 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 RNF157Q96PX1 679 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 SIK2Q9H0K1 926 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 RETREG1Q9H6L5 497 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 L2HGDHQ9H9P8 463 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 OBP2AQ9NY56 170 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 CWC15Q9P013 229 aaKnown RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 CFAP97Q9P2B7 532 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 PPARGC1AQ9UBK2 798 aaKnown RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 AGO1Q9UL18 857 aaKnown RBP11.1□□□□□ -0.63
SS18-213ENST00000579640 CDH7Q9ULB5 785 aa11.1□□□□□ -0.63
SS18-213ENST00000579640 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 F5H5T6 163 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FGF10O15520 208 aaPredicted RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 DAPK3O43293 454 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 CREB3O43889 395 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 GREM1O60565 184 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 LRIG2O94898 1065 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 KLKB1P03952 638 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 GOT1P17174 413 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 TACR2P21452 398 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 IL4RP24394 825 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ZXDBP98169 803 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 AUHQ13825 339 aaKnown RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 CBX2Q14781 532 aaPredicted RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 LONRF2Q1L5Z9 754 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ADGRF1Q5T601 910 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 MANEALQ5VSG8 457 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 AADACL2Q6P093 401 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 RFX8Q6ZV50 586 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms